Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d05r
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   2.2  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   2.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   5.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   5.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   6.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 539 SWYQAPPVNDLSGSKL*SI*TF--FLEALTHFTAFITFLLSKFLRT 670
           +WYQ PP+N +    L  +     F+ A+ +      FL +K LRT
Sbjct: 40  NWYQYPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRT 85


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 714 DIRIRSNLANTQLTKVLKN-LES 649
           D R RSN +NT  T +L N LES
Sbjct: 86  DSRDRSNTSNTSKTVILSNKLES 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 714 DIRIRSNLANTQLTKVLKN-LES 649
           D R RSN +NT  T +L N LES
Sbjct: 86  DSRDRSNTSNTSKTIILSNKLES 108


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 714 DIRIRSNLANTQLTKVLKN 658
           D R RSN +NT  T +L N
Sbjct: 86  DSRDRSNTSNTSKTVILSN 104


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 756 NLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLES 649
           +L+E + NK      + ++ N AN     +  N+ES
Sbjct: 85  SLVEFSENKNCNAGSLTVKKNFANKYCGNITLNIES 120


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 539 SWYQAPPVNDLSGSKL*SI*TF--FLEALTHFTAFITFLLSKFLRT 670
           +WYQ PP+N +    L  +     F+  + +      FL +K LRT
Sbjct: 6   NWYQYPPLNPMWHGILGFVIGMLGFVSVMGNGMVVYIFLSTKSLRT 51


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 714 DIRIRSNLANTQLTKVLKN 658
           D R RSN +NT  T +L N
Sbjct: 86  DSRDRSNTSNTSKTIILSN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,165
Number of Sequences: 438
Number of extensions: 4340
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)