Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d05f
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0683 - 23490215-23490997                                         71   1e-12
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412...    29   4.1  
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    29   5.5  
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348...    29   5.5  
05_07_0124 - 27852840-27853571,27853726-27853769,27854224-278542...    28   7.2  

>06_03_0683 - 23490215-23490997
          Length = 260

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 32/93 (34%), Positives = 55/93 (59%)
 Frame = +2

Query: 317 EKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIKAVKCVNASKKKVYM 496
           E+ +Y L+   G+KG+   +IRI++ +  + LTK L+ L SK V+K V  V+   +K+YM
Sbjct: 54  ERPIYKLVFAGGDKGMSQTEIRIKTGMPTSTLTKHLRGLTSKGVLKVVNSVHKRAEKIYM 113

Query: 497 LYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQC 595
              ++P   +TGG WY++   +S+ V     +C
Sbjct: 114 DVRIDPSPEITGGTWYRNGQLDSDAVASARRRC 146


>09_04_0047 -
           14139706-14140140,14140234-14140636,14141028-14141272,
           14141341-14141576,14141651-14141939
          Length = 535

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 218 SADHLKQLLVLLMICQVFQQLYP 150
           SADHL +L VL MI Q   +LYP
Sbjct: 382 SADHLSKLTVLQMIIQETLRLYP 404


>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 68  YFPKMSSED-TKEKILN--LARKSSKGITDKDIIAEIPGISSVELVTALNDLLKQERFD 235
           Y P ++ +  TK+K     L   SSK  T       I G  S  L+T+ +D +KQ RFD
Sbjct: 436 YPPSITDQSITKDKCTFQVLRSDSSKNHTGDSSDPSILGTDSNPLITSSSDWMKQRRFD 494


>04_04_0516 +
           25833801-25834046,25834412-25834532,25834636-25834821,
           25834918-25834944,25836203-25836351,25836553-25836602,
           25837181-25837289,25837395-25837532,25838184-25838463,
           25838533-25838656,25838994-25839003
          Length = 479

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 162 AIISLSVIPFELFLARFSIFSFVSSELIFGKY*AFVY 52
           AII   ++P+   L  F  ++FVS  L+FG Y  FVY
Sbjct: 376 AIIPKQIMPWTGLLLMFE-WTFVSFFLLFGSYLRFVY 411


>05_07_0124 -
           27852840-27853571,27853726-27853769,27854224-27854272,
           27854753-27854857,27855257-27855366,27857165-27857823,
           27858355-27858572
          Length = 638

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 493 INLLFRGINTFHSFYHFFTFQIFEDFSQLSVCKIRTDPNISN 368
           I+L+   ++T H+      F++ +  S++  CKI T   +S+
Sbjct: 7   IHLMHTSLDTLHTALRHSVFKLMDRHSRIGACKILTSLQLSD 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,438
Number of Sequences: 37544
Number of extensions: 284239
Number of successful extensions: 729
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)