Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d05f
(781 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012588-1|AAH12588.1| 316|Homo sapiens polymerase (RNA) III (D... 247 3e-65
AL121893-4|CAC11110.1| 316|Homo sapiens polymerase (RNA) III (D... 247 3e-65
AK223298-1|BAD97018.1| 316|Homo sapiens DNA-directed RNA polyme... 247 4e-65
U93869-1|AAB63677.1| 317|Homo sapiens RNA polymerase III subuni... 243 5e-64
BC016761-1|AAH16761.1| 275|Homo sapiens POLR3F protein protein. 233 7e-61
U06485-1|AAA85638.1| 660|Homo sapiens TFIIIC alpha subunit prot... 32 2.7
U02619-1|AAA17985.1| 2109|Homo sapiens TFIIIC Box B-binding subu... 32 2.7
AC002303-1|AAB67637.1| 1857|Homo sapiens Transcription factor (T... 32 2.7
>BC012588-1|AAH12588.1| 316|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide F, 39 kDa protein.
Length = 316
Score = 247 bits (605), Expect = 3e-65
Identities = 118/236 (50%), Positives = 157/236 (66%)
Frame = +2
Query: 74 PKMSSEDTKEKILNLARKSSKGITDKDIIAEIPGISSVELVTALNDLLKQERFDLFNQNG 253
P + + +I+ L + GITD+ I E+P I + + A+N LL + DL N
Sbjct: 11 PDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNT 70
Query: 254 SLIYKLKTQTNKHAIKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNL 433
L+Y++K N +KG+DN+EK+VY +IE+AGNKGIW RDIR +SNL T++ K+LKNL
Sbjct: 71 GLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNL 130
Query: 434 ESKKVIKAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRFLSQ 613
ESKK+IKAVK V ASKKKVYMLYNL+PDRS+TGGAWY DQDFESEFV+VLN QC +FL
Sbjct: 131 ESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQS 190
Query: 614 RADNMRNNPRGPVFGRTQAYATATEVQKYITDLGISKXXXXXXXXXXXXXXXXYDG 781
+A+ R + + P+ R ++A++ EV KYI +LGISK YDG
Sbjct: 191 KAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDG 246
>AL121893-4|CAC11110.1| 316|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide F, 39 kDa protein.
Length = 316
Score = 247 bits (605), Expect = 3e-65
Identities = 118/236 (50%), Positives = 157/236 (66%)
Frame = +2
Query: 74 PKMSSEDTKEKILNLARKSSKGITDKDIIAEIPGISSVELVTALNDLLKQERFDLFNQNG 253
P + + +I+ L + GITD+ I E+P I + + A+N LL + DL N
Sbjct: 11 PDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNT 70
Query: 254 SLIYKLKTQTNKHAIKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNL 433
L+Y++K N +KG+DN+EK+VY +IE+AGNKGIW RDIR +SNL T++ K+LKNL
Sbjct: 71 GLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNL 130
Query: 434 ESKKVIKAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRFLSQ 613
ESKK+IKAVK V ASKKKVYMLYNL+PDRS+TGGAWY DQDFESEFV+VLN QC +FL
Sbjct: 131 ESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQS 190
Query: 614 RADNMRNNPRGPVFGRTQAYATATEVQKYITDLGISKXXXXXXXXXXXXXXXXYDG 781
+A+ R + + P+ R ++A++ EV KYI +LGISK YDG
Sbjct: 191 KAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDG 246
>AK223298-1|BAD97018.1| 316|Homo sapiens DNA-directed RNA
polymerase III 39 kDa polypeptide F variant protein.
Length = 316
Score = 247 bits (604), Expect = 4e-65
Identities = 117/236 (49%), Positives = 157/236 (66%)
Frame = +2
Query: 74 PKMSSEDTKEKILNLARKSSKGITDKDIIAEIPGISSVELVTALNDLLKQERFDLFNQNG 253
P + + +I+ L + GITD+ I E+P I + + A+N LL + DL N
Sbjct: 11 PDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNT 70
Query: 254 SLIYKLKTQTNKHAIKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNL 433
L+Y++K N +KG+DN+EK+VY +IE+AGNKGIW RD+R +SNL T++ K+LKNL
Sbjct: 71 GLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNL 130
Query: 434 ESKKVIKAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRFLSQ 613
ESKK+IKAVK V ASKKKVYMLYNL+PDRS+TGGAWY DQDFESEFV+VLN QC +FL
Sbjct: 131 ESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQS 190
Query: 614 RADNMRNNPRGPVFGRTQAYATATEVQKYITDLGISKXXXXXXXXXXXXXXXXYDG 781
+A+ R + + P+ R ++A++ EV KYI +LGISK YDG
Sbjct: 191 KAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDG 246
>U93869-1|AAB63677.1| 317|Homo sapiens RNA polymerase III subunit
protein.
Length = 317
Score = 243 bits (595), Expect = 5e-64
Identities = 117/236 (49%), Positives = 156/236 (66%)
Frame = +2
Query: 74 PKMSSEDTKEKILNLARKSSKGITDKDIIAEIPGISSVELVTALNDLLKQERFDLFNQNG 253
P + + +I+ L + GITD+ I E+P S +++N LL + DL N
Sbjct: 11 PDADPVEIENRIIELCHQFPHGITDQVIQNEMPQYRSPAAGSSINRLLSMGQLDLLRSNT 70
Query: 254 SLIYKLKTQTNKHAIKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNL 433
L+Y++K N +KG+DN+EK+VY +IE+AGNKGIW RDIR +SNL T++ K+LKNL
Sbjct: 71 GLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNL 130
Query: 434 ESKKVIKAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRFLSQ 613
ESKK+IKAVK V ASKKKVYMLYNL+PDRS+TGGAWY DQDFESEFV+VLN QC +FL
Sbjct: 131 ESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQS 190
Query: 614 RADNMRNNPRGPVFGRTQAYATATEVQKYITDLGISKXXXXXXXXXXXXXXXXYDG 781
+A+ R + + P+ R ++A++ EV KYI +LGISK YDG
Sbjct: 191 KAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDG 246
>BC016761-1|AAH16761.1| 275|Homo sapiens POLR3F protein protein.
Length = 275
Score = 233 bits (569), Expect = 7e-61
Identities = 109/205 (53%), Positives = 142/205 (69%)
Frame = +2
Query: 167 IPGISSVELVTALNDLLKQERFDLFNQNGSLIYKLKTQTNKHAIKGADNEEKVVYNLIEE 346
+P I + + A+N LL + DL N L+Y++K N +KG+DN+EK+VY +IE+
Sbjct: 1 MPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIED 60
Query: 347 AGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIKAVKCVNASKKKVYMLYNLEPDRSL 526
AGNKGIW RDIR +SNL T++ K+LKNLESKK+IKAVK V ASKKKVYMLYNL+PDRS+
Sbjct: 61 AGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSV 120
Query: 527 TGGAWYQDQDFESEFVDVLNVQCHRFLSQRADNMRNNPRGPVFGRTQAYATATEVQKYIT 706
TGGAWY DQDFESEFV+VLN QC +FL +A+ R + + P+ R ++A++ EV KYI
Sbjct: 121 TGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYIC 180
Query: 707 DLGISKXXXXXXXXXXXXXXXXYDG 781
+LGISK YDG
Sbjct: 181 ELGISKVELSMEDIETILNTLIYDG 205
>U06485-1|AAA85638.1| 660|Homo sapiens TFIIIC alpha subunit
protein.
Length = 660
Score = 31.9 bits (69), Expect = 2.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 329 YNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIK 454
Y+LIE G KGI +IR+ N+ + + + L+ KV+K
Sbjct: 305 YDLIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVK 346
>U02619-1|AAA17985.1| 2109|Homo sapiens TFIIIC Box B-binding subunit
protein.
Length = 2109
Score = 31.9 bits (69), Expect = 2.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 329 YNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIK 454
Y+LIE G KGI +IR+ N+ + + + L+ KV+K
Sbjct: 373 YDLIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVK 414
>AC002303-1|AAB67637.1| 1857|Homo sapiens Transcription factor
(TFIIIC) alpha chain, partial protein.
Length = 1857
Score = 31.9 bits (69), Expect = 2.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 329 YNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIK 454
Y+LIE G KGI +IR+ N+ + + + L+ KV+K
Sbjct: 121 YDLIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVK 162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,709,932
Number of Sequences: 237096
Number of extensions: 1652778
Number of successful extensions: 4584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4584
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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