Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d05f
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical pr...   134   7e-32
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    32   0.53 
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    31   0.92 
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    31   0.92 
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    31   0.92 
AF016443-14|AAC24274.1|  217|Caenorhabditis elegans Hypothetical...    29   4.9  
AF067622-2|AAK68367.1|  651|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z47745-1|CAA87663.1|  358|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical
           protein W09C3.4 protein.
          Length = 296

 Score =  134 bits (324), Expect = 7e-32
 Identities = 71/211 (33%), Positives = 126/211 (59%), Gaps = 1/211 (0%)
 Frame = +2

Query: 80  MSSEDTKEKILNLARKSSKGITDKDIIAEIPGISSVELVTALNDLLKQERFDLFNQNGSL 259
           +S+ +++ +++ + + + +GI    + +  PG+      TA+N LL  ++  +    G +
Sbjct: 9   ISAAESESQVMQIVQAALEGIDMDALTSMTPGLPQTVRQTAINSLLSSKKLAIQQAPGGV 68

Query: 260 IYKLKTQTNKHAIKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLES 439
           + +LK  T++  I G + EE+V+Y+LIEE+  +GIWI+++R  S L   QL K LK+LE+
Sbjct: 69  L-RLKVNTSEQ-IAGTE-EEQVIYSLIEESKTRGIWIKELREGSGLNQLQLRKTLKSLET 125

Query: 440 KKVIKAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRF-LSQR 616
           KK+IK +K V  + +K Y+L+++EPD SLTGG +Y DQ  +SE ++ L   C  +  S+R
Sbjct: 126 KKLIKTIKAVGTT-RKCYILFSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRR 184

Query: 617 ADNMRNNPRGPVFGRTQAYATATEVQKYITD 709
              +  NP      R  +Y    E+ ++IT+
Sbjct: 185 KHAIDENPNNIQMQREASYIRPQEIAQFITE 215


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 508 QVVKHINLLFRGINTFHSFYHFFTFQIFEDFSQLS 404
           Q  KH+ LL R +    S  + FT ++  DF++LS
Sbjct: 430 QSAKHVKLLLRKVQALESIRNAFTSKVINDFNKLS 464


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = -1

Query: 469  NTFHSFYHFFTFQIFEDFSQ-----LSVCKIRTDPN--ISNPNSFISCFFNQIIDYLFFI 311
            N +  F+ F     + D++      LS C +  +     +  N   + F+ QI +Y+F +
Sbjct: 909  NKYKQFHDFLAIMTYMDWTMVLVTTLSCCSMLWESPWPTTGENLIFNNFYLQIAEYIFVL 968

Query: 310  ICSFDCVLICLS 275
            + SF+ ++ C++
Sbjct: 969  VMSFELIVKCIA 980


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = -1

Query: 469  NTFHSFYHFFTFQIFEDFSQ-----LSVCKIRTDPN--ISNPNSFISCFFNQIIDYLFFI 311
            N +  F+ F     + D++      LS C +  +     +  N   + F+ QI +Y+F +
Sbjct: 887  NKYKQFHDFLAIMTYMDWTMVLVTTLSCCSMLWESPWPTTGENLIFNNFYLQIAEYIFVL 946

Query: 310  ICSFDCVLICLS 275
            + SF+ ++ C++
Sbjct: 947  VMSFELIVKCIA 958


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = -1

Query: 469  NTFHSFYHFFTFQIFEDFSQ-----LSVCKIRTDPN--ISNPNSFISCFFNQIIDYLFFI 311
            N +  F+ F     + D++      LS C +  +     +  N   + F+ QI +Y+F +
Sbjct: 909  NKYKQFHDFLAIMTYMDWTMVLVTTLSCCSMLWESPWPTTGENLIFNNFYLQIAEYIFVL 968

Query: 310  ICSFDCVLICLS 275
            + SF+ ++ C++
Sbjct: 969  VMSFELIVKCIA 980


>AF016443-14|AAC24274.1|  217|Caenorhabditis elegans Hypothetical
           protein C17E7.1 protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 599 RFLSQRADN-MRNNPRGPVFGRTQAYATATEVQKYITDLGI 718
           R L ++  N ++N   GP+FGR Q    A   + Y  ++ +
Sbjct: 124 RPLIEKTSNILKNGAEGPIFGRNQLQKLANGFENYTNEISV 164


>AF067622-2|AAK68367.1|  651|Caenorhabditis elegans Hypothetical
           protein F33E11.3 protein.
          Length = 651

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = +2

Query: 182 SVELVTALNDLLKQERFDLFNQNGSLIYKLKTQTNKHAIKGADNEEKVVYNLIEEAGNKG 361
           S     A  DLL+QE      QN  L+ +L     +HA++ A+  EK    L +E     
Sbjct: 109 SAAAAAARIDLLEQELRLKLAQNERLVGELAENERQHAVEMAEMSEK----LAKEMRKLE 164

Query: 362 IWIRDIRIRSN---LANTQLTKVLKNLESKK 445
             ++ +R+R+    +A   L   L+ +E KK
Sbjct: 165 DEVKRMRMRTKAAAVATKPLEDELEKIEEKK 195


>Z47745-1|CAA87663.1|  358|Caenorhabditis elegans Hypothetical
           protein T19H5.2 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 77  KMSSEDTKEKILNLARKSSKGITDKDIIAEIPGIS-SVELVTALNDLLKQERF 232
           +  S  +K+K LNL RKS     + + I  I G + S +L   L DL K  RF
Sbjct: 111 QFESAISKQKFLNLNRKSKHINNNVNRILSIGGTNYSEKLSIMLQDLKKTRRF 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,201
Number of Sequences: 27780
Number of extensions: 290940
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)