Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d01r
(917 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 31 0.23
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 28 2.1
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.8
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 27 3.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.7
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 4.9
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 4.9
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 31.1 bits (67), Expect = 0.23
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = -3
Query: 714 EKIEAVPVTIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVAT 535
E A T ++T++ +P + L + + ++ P+ L + ++ L Q+ V +
Sbjct: 857 ETSSAFAKTYAEKEVTSINLPSVRKPLDESYYDHSISPF--DPLCQ--SSFLAPQTPVKS 912
Query: 534 PVIIPAMEVSL--WTLTEISAALESPVTNPV 448
+P +E + W + S+ LESPV NPV
Sbjct: 913 KHALPLVEANAPPWEPIDFSSLLESPVPNPV 943
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 469 LKSSRDLGQGPEGDFHSRDNHWSGNLALSSQDGG 570
L S++ Q P GD++S D S SSQ G
Sbjct: 217 LNSNKKQSQSPNGDYNSSDESCSNKTVASSQRRG 250
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +1
Query: 409 HDHVEGILQVRNQNRVSYRALKSSRDLGQGPEGDFHSRDNHWSGNLALSSQDG 567
H+ + L+ RN +S SS L S H SGNLAL S G
Sbjct: 203 HEMAQESLETRNPGNIS----SSSAPLASDQSPTVSSNHIHASGNLALGSNSG 251
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.8
Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 2/144 (1%)
Frame = -3
Query: 783 TSAAVLPYLETALNQMMAALHAGEKIEAVPVT--IPALDLTAMTIPDLSNALQDPKTEPA 610
T+++ LP T+ + G + P+T +P ++ +IP + T +
Sbjct: 217 TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 276
Query: 609 MIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISAALESPVTNPVLVPYLE 430
+P + + TG S +P S + A+ S T+ +P
Sbjct: 277 PLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTS 336
Query: 429 NALNVIMDAMFAGHEVTSICVSIP 358
+ G+ T + ++P
Sbjct: 337 TSCTTSTSIPPTGNSTTPVTPTVP 360
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 2/113 (1%)
Frame = -3
Query: 690 TIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPV--IIPA 517
T+P ++ +IP + T + +P + + G S ++TP+ +P
Sbjct: 194 TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPP 253
Query: 516 MEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMDAMFAGHEVTSICVSIP 358
S ++ + S TN +P + G+ T + ++P
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 27.1 bits (57), Expect = 3.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 88 DHRSHRGWAFNNNDRFGSD 144
+H+ H GW F NN+ F +
Sbjct: 98 NHKYHYGWVFLNNEEFSDE 116
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 819 VHELSNAIQSPYTSAAVLPYLETALNQMMAALHAGEKIEAVPVTIPA 679
V+EL+ P ++A+ P ++ +NQ+M+ A AVP IPA
Sbjct: 854 VNELNGVSTKP--ASAITPETKSTVNQIMSGGEALAAPVAVPAPIPA 898
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 4.9
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = -3
Query: 705 EAVPVTIPALDLTAMTIP-DLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPV 529
E +TIP ++T MTIP + + P E I + + E +T + T + T
Sbjct: 22 EITTMTIPMEEITTMTIPMEEITTMTIPMEE---ITTMTTPMEE-ITTITTPMEETTT-- 75
Query: 528 IIPAMEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMD 406
I P +E + T+ + AA+ +P+ +P +E +++
Sbjct: 76 ITPMVETT--TILPM-AAMTTPMVETTTIPTVETTTTPMVE 113
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 456 NPVLVPYLENALNVIMDAMFA 394
N ++PYL+N L VI D + A
Sbjct: 326 NEAMIPYLQNILKVIRDTLTA 346
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,914
Number of Sequences: 5004
Number of extensions: 61202
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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