Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c24r
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        27   1.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   1.6  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   1.6  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    25   2.8  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   2.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    24   6.5  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    24   8.6  

>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 195 NRQLKFDVPDGVSVNTDSDNSTSANAHV 278
           +RQ+KF   D +S++   DN TSA+  V
Sbjct: 339 SRQVKFSPADVISLSGCKDNQTSADTSV 366


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 143 GRISDFLNKLPYNLEKYQSQVSRVLEYVSEY 51
           G +    ++ P  L K   Q+S  LEY SEY
Sbjct: 148 GDVETIASQSPLELSKLVEQISGSLEYKSEY 178


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 225 GVSVNTDSDNSTSANAHVGHGDSSRSVCG 311
           G  V     NS+  N H  HG   R+VCG
Sbjct: 539 GTLVPPTKQNSSPKNGHGIHGSFLRTVCG 567


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 236 DGYTVRNVELELSIGEINSEIQLNLFGREVGGRISDFL 123
           D Y   NV   LS+G++  +++L       G R+SD L
Sbjct: 300 DTYQRTNVPTVLSLGDVCGKLELTPVAIAAGRRLSDRL 337


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +3

Query: 153 TPEQVQLDFRVDFSNRQLKFDVPDGVSVN----TDSDNSTSANAHVGHGDSSRSVCGQ 314
           T E + L+    FS+  ++ D  D  S +    +DSD   S + H  HG  + + C Q
Sbjct: 335 TGEALALENYDGFSDLDVEEDEDDVESSSNEEVSDSDEEDSDSKHTAHGQQNAAECRQ 392


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +3

Query: 135 DASSDLTPEQVQLDFRVDFSNRQLKFDVPDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQ 314
           D + D  P +      VD +N +   +  DG+ ++ D+D + S+       ++ R V   
Sbjct: 15  DKNEDGYPAENGEGTNVDDNNNE---EEKDGIPLDNDNDENDSSEESATDEEAERQVREG 71

Query: 315 FTVEN 329
           F VE+
Sbjct: 72  FIVED 76


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 7   YYCASEGLDRSLLMMYSETYSKT 75
           Y C S  + R+LL  ++E  SKT
Sbjct: 118 YVCFSSTISRALLEQFAELASKT 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.126    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,160
Number of Sequences: 5004
Number of extensions: 18051
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)