Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18c24r
(370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42... 30 0.65
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782... 29 0.86
03_06_0126 + 31865339-31867943,31868176-31868660 28 2.0
07_03_1176 + 24567720-24570932 28 2.6
05_06_0263 + 26752759-26754393 28 2.6
02_02_0191 + 7642942-7642944,7643405-7643513,7643578-7643886,764... 27 3.5
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846... 27 4.6
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805... 26 8.1
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230... 26 8.1
03_05_0354 + 23411485-23411802,23411886-23412176,23414610-234146... 26 8.1
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 26 8.1
01_06_0716 - 31425189-31426460 26 8.1
>01_01_0056 +
422141-422379,422524-422620,422697-422774,422871-422930,
423019-423123,423743-423856,424145-424186,424380-424496,
424568-424755,425502-425785,425869-425990,426118-426160,
426265-426356,427331-427379,427623-427693,427793-427912,
428586-428674,429266-429311,429926-429973
Length = 667
Score = 29.9 bits (64), Expect = 0.65
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = +3
Query: 135 DASSDLT---PEQVQLDFRVDFSNRQLKF----DVPDGVSVNTDSDNSTSANAHVGHGDS 293
D SS ++ P V LDF + N K DV D S + ++ +AH GHGDS
Sbjct: 353 DVSSQVSQHDPHSVPLDFEPENQNPPFKHLSRSDVSDA-SEGAEVQHAREHSAHWGHGDS 411
Query: 294 SRSVCG 311
V G
Sbjct: 412 VNLVSG 417
>07_01_0929 +
7818973-7820019,7820092-7820328,7820455-7820541,
7820785-7820919
Length = 501
Score = 29.5 bits (63), Expect = 0.86
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 213 DVPDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQFTVENL 332
D P+ + D+ S N GHGDSS ++ F+V ++
Sbjct: 450 DSPETEAAGDDAKESEGKNNPHGHGDSSEAISVMFSVPSM 489
>03_06_0126 + 31865339-31867943,31868176-31868660
Length = 1029
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 212 ELELSIGEINSEIQLNLFGREVGGRISDFLNKLPYNLEKYQ 90
E+ S E+ + LNLF ++ G I DF+ LP +LE Q
Sbjct: 303 EIPASFSELKNLTLLNLFRNKLRGDIPDFVGDLP-SLEVLQ 342
>07_03_1176 + 24567720-24570932
Length = 1070
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 200 SIGEINSEIQLNLFGREVGGRISDFLNKLPYNLEK 96
SIG++N I L+L +GG I + LP NLE+
Sbjct: 544 SIGQLNYLISLDLSRNHLGGEIPTSVKNLP-NLER 577
>05_06_0263 + 26752759-26754393
Length = 544
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 179 EIQLNLFGREVGGRISDFLNKLPYNLEKYQSQVS 78
+++ NLFG E G +S L+KLP +E Y S ++
Sbjct: 333 DLRDNLFGVEAGLALSKTLSKLPDLVELYLSDLN 366
>02_02_0191 +
7642942-7642944,7643405-7643513,7643578-7643886,
7644697-7644839
Length = 187
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 111 LQLRKIPIPGQPGF 70
L L K+P+PG+PGF
Sbjct: 112 LGLEKVPVPGEPGF 125
>04_02_0007 +
8464923-8465155,8466037-8466591,8466645-8467662,
8467768-8468485,8468651-8468937
Length = 936
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 197 IGEINSEIQLNLFGREVGGRISDFLNKLP 111
IG + S Q+NL + G I D L KLP
Sbjct: 156 IGNLTSLSQINLTDNHLSGAIPDELGKLP 184
>08_02_0094 +
12277756-12278574,12280314-12280418,12280487-12280543,
12280969-12281041,12281525-12281703,12281788-12281961,
12282041-12282326,12282433-12282509,12282599-12282668,
12282751-12282822,12282920-12283155,12283240-12283374,
12283466-12283761,12284237-12284408,12284510-12284608,
12284704-12284835,12284950-12285050,12285426-12285615,
12285723-12285761
Length = 1103
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +3
Query: 195 NRQLKFDVPDGVSVNTDSDNSTSANAHVGHGD---SSRSVCGQFTVENLDFSF 344
N + +PD V V T +N N+ V +GD +S + N DF +
Sbjct: 563 NADVDASIPDDVVVCTPIENDPCVNSFVANGDDVIASGHAAALISSSNRDFDY 615
>05_01_0296 -
2303344-2303395,2303732-2304180,2304287-2304355,
2304539-2306546,2311181-2311425
Length = 940
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = -3
Query: 152 EVGGRISD-FLNKLPY-NLEKYQSQVSRVLEYVSEYIINRLL 33
E+ ++ D L+K PY N+ K +++ ++EY SE ++NR+L
Sbjct: 547 EIIKKLKDCLLSKTPYVNMTKVAAKLL-LMEYTSEELLNRVL 587
>03_05_0354 +
23411485-23411802,23411886-23412176,23414610-23414675,
23415186-23415645,23415963-23416189,23416362-23416649,
23416955-23416966
Length = 553
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 150 GRRTHQRLLEQAPLQLRKIPIPGQPGFGVRLRIHH 46
GR L E+ ++ ++P+P QPG V +++ H
Sbjct: 408 GRVAEYNLREEDREEISRVPVPVQPGNPVFVQVIH 442
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 150 LTPEQVQLDFRVDFSNRQLKFDVPDGVSVNTDSDNSTSANAHVGHGDSSRSVC 308
+TP ++ F + + D PD + + T +NSTS NA + + VC
Sbjct: 576 ITPRKLSQTFAAAVESPIICSDSPDKMYMVT-LENSTSPNASLNENKENEKVC 627
>01_06_0716 - 31425189-31426460
Length = 423
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 218 NVELELSIGEINSEIQLNLFGREVGGRISDFLNKLP 111
N + SIG++ S ++L + GRI D ++ LP
Sbjct: 237 NGNIPTSIGDLISLTTIDLSNNSISGRIPDTVSTLP 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.126 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,000,761
Number of Sequences: 37544
Number of extensions: 117432
Number of successful extensions: 457
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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