Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c24r
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   8.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 111 LQLRKIPIPGQPGFGVRLR 55
           L+LR +PI G+P F +R++
Sbjct: 95  LELRDLPISGKP-FQIRMK 112


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 222  DGVSVNTDSD 251
            DGVS+N DSD
Sbjct: 977  DGVSLNLDSD 986



 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 240 TDSDNSTSANAHVGHGDSSRSVCGQF 317
           TD++NS  A  ++G G +++    +F
Sbjct: 465 TDAENSRRAMENLGDGRNNKEDSEEF 490


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 76  GFWSTSPNTSSTDFCPDLLMRNNT 5
           G WS  PN    D   DL+  N +
Sbjct: 672 GSWSNRPNLLFKDEAKDLVSVNKS 695


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 76  GFWSTSPNTSSTDFCPDLLMRNNT 5
           G WS  PN    D   DL+  N +
Sbjct: 672 GSWSNRPNLLFKDEAKDLVSVNKS 695


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 76  GFWSTSPNTSSTDFCPDLLMRNNT 5
           G WS  PN    D   DL+  N +
Sbjct: 672 GSWSNRPNLLFKDEAKDLVSVNKS 695


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 204 LKFDVPDGVSVNTDSDN 254
           + FD  D + VN   DN
Sbjct: 174 INFDKYDNIQVNVSGDN 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.126    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,165
Number of Sequences: 438
Number of extensions: 1163
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)