Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c24f
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    30   0.92 
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782...    29   1.2  
03_06_0126 + 31865339-31867943,31868176-31868660                       28   2.8  
07_03_1176 + 24567720-24570932                                         28   3.7  
05_06_0263 + 26752759-26754393                                         28   3.7  
02_02_0191 + 7642942-7642944,7643405-7643513,7643578-7643886,764...    27   4.9  
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    27   6.5  

>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = -3

Query: 236 DASSDLT---PEQVQLDFRVDFSNRQLKF----DVPDGVSVNTDSDNSTSANAHVGHGDS 78
           D SS ++   P  V LDF  +  N   K     DV D  S   +  ++   +AH GHGDS
Sbjct: 353 DVSSQVSQHDPHSVPLDFEPENQNPPFKHLSRSDVSDA-SEGAEVQHAREHSAHWGHGDS 411

Query: 77  SRSVCG 60
              V G
Sbjct: 412 VNLVSG 417


>07_01_0929 +
           7818973-7820019,7820092-7820328,7820455-7820541,
           7820785-7820919
          Length = 501

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 158 DVPDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQFTVENL 39
           D P+  +   D+  S   N   GHGDSS ++   F+V ++
Sbjct: 450 DSPETEAAGDDAKESEGKNNPHGHGDSSEAISVMFSVPSM 489


>03_06_0126 + 31865339-31867943,31868176-31868660
          Length = 1029

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 159 ELELSIGEINSEIQLNLFGREVGGRISDFLNKLPYNLEKYQ 281
           E+  S  E+ +   LNLF  ++ G I DF+  LP +LE  Q
Sbjct: 303 EIPASFSELKNLTLLNLFRNKLRGDIPDFVGDLP-SLEVLQ 342


>07_03_1176 + 24567720-24570932
          Length = 1070

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 171 SIGEINSEIQLNLFGREVGGRISDFLNKLPYNLEK 275
           SIG++N  I L+L    +GG I   +  LP NLE+
Sbjct: 544 SIGQLNYLISLDLSRNHLGGEIPTSVKNLP-NLER 577


>05_06_0263 + 26752759-26754393
          Length = 544

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 192 EIQLNLFGREVGGRISDFLNKLPYNLEKYQSQVS 293
           +++ NLFG E G  +S  L+KLP  +E Y S ++
Sbjct: 333 DLRDNLFGVEAGLALSKTLSKLPDLVELYLSDLN 366


>02_02_0191 +
           7642942-7642944,7643405-7643513,7643578-7643886,
           7644697-7644839
          Length = 187

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 260 LQLRKIPIPGQPGF 301
           L L K+P+PG+PGF
Sbjct: 112 LGLEKVPVPGEPGF 125


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 174 IGEINSEIQLNLFGREVGGRISDFLNKLP 260
           IG + S  Q+NL    + G I D L KLP
Sbjct: 156 IGNLTSLSQINLTDNHLSGAIPDELGKLP 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,269,831
Number of Sequences: 37544
Number of extensions: 148716
Number of successful extensions: 512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)