Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c24f
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50016-8|CAA90315.1|  393|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U97193-6|AAV34803.1|  780|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U40421-2|AAA81438.1|  453|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF125459-1|AAD12837.1|  189|Caenorhabditis elegans Hypothetical ...    27   4.4  
AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm rece...    27   7.7  

>Z50016-8|CAA90315.1|  393|Caenorhabditis elegans Hypothetical
           protein T21C12.2 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 122 DNSTSANAHVGHGDSSRSVCGQFTVENLD 36
           DNS   N  V HGD  + VC  F VE+LD
Sbjct: 77  DNSELGNHLVQHGDGVKDVC--FEVEDLD 103


>U97193-6|AAV34803.1|  780|Caenorhabditis elegans Hypothetical
           protein C06A5.3a protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = -3

Query: 353 IRRSGQKSVDDVFGDVLQNPADLXXXXXXXXXXXXXXVADASSD--LTPEQVQ--LDFRV 186
           I  SG   V D+F ++  NP D+               +D S D  L+PE +   L   V
Sbjct: 274 ISLSGFSGVSDMFDELFNNPGDIDSHADQLMLTLNNMPSDGSIDRPLSPEMLNPILQAAV 333

Query: 185 DFSNR 171
           +F +R
Sbjct: 334 EFCDR 338


>U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical
           protein C06A5.3b protein.
          Length = 783

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = -3

Query: 353 IRRSGQKSVDDVFGDVLQNPADLXXXXXXXXXXXXXXVADASSD--LTPEQVQ--LDFRV 186
           I  SG   V D+F ++  NP D+               +D S D  L+PE +   L   V
Sbjct: 274 ISLSGFSGVSDMFDELFNNPGDIDSHADQLMLTLNNMPSDGSIDRPLSPEMLNPILQAAV 333

Query: 185 DFSNR 171
           +F +R
Sbjct: 334 EFCDR 338


>U40421-2|AAA81438.1|  453|Caenorhabditis elegans Hypothetical
           protein C02B8.5 protein.
          Length = 453

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 301 WSTSPNTSSTDFCPDLLMRN 360
           WST  NT+S D CP  L  N
Sbjct: 76  WSTMYNTASKDVCPTALRSN 95


>AF125459-1|AAD12837.1|  189|Caenorhabditis elegans Hypothetical
           protein Y25C1A.6 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 239 ADASSDLTPEQVQLDFRVDFSNRQLKFD---VPDGVSVNTDSDN 117
           ++ S  LTPE +QLD  + +S  +L+FD    P+ +  N + D+
Sbjct: 110 SEESYPLTPEPIQLDTCLTWSPVELQFDPFAEPEPIFYNEEMDS 153


>AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 158 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +2

Query: 260 LQLRKIPIPGQPGFGVRLRIHHQQTSVQTF*CAIIPVLFINIAYNSKIKCSLINL 424
           L+++ +   G+  F  RL++   +  +  F   +IP+LF+ +  ++ I C L  L
Sbjct: 228 LKIKNLNSQGESEFSKRLQVQLYKALIAQF---LIPMLFLFLPTSTFISCPLFKL 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,095,844
Number of Sequences: 27780
Number of extensions: 139158
Number of successful extensions: 429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)