Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c24f
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.63 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 298 FWSTSPNTSSTDFCPDLLMRNNTCFIYKHSLQFENKMFS-Y*PKKK 432
           F   + N ++  FC DL +  +T  +Y  S  F+  +FS Y  KK+
Sbjct: 335 FILVAENNTTMVFCNDLSIDRSTNTMYVLSDNFQQLLFSKYDAKKR 380


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 260 LQLRKIPIPGQPGFGVRLR 316
           L+LR +PI G+P F +R++
Sbjct: 95  LELRDLPISGKP-FQIRMK 112


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 149  DGVSVNTDSD 120
            DGVS+N DSD
Sbjct: 977  DGVSLNLDSD 986


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 295 GFWSTSPNTSSTDFCPDLLMRNNT 366
           G WS  PN    D   DL+  N +
Sbjct: 672 GSWSNRPNLLFKDEAKDLVSVNKS 695


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 295 GFWSTSPNTSSTDFCPDLLMRNNT 366
           G WS  PN    D   DL+  N +
Sbjct: 672 GSWSNRPNLLFKDEAKDLVSVNKS 695


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 295 GFWSTSPNTSSTDFCPDLLMRNNT 366
           G WS  PN    D   DL+  N +
Sbjct: 672 GSWSNRPNLLFKDEAKDLVSVNKS 695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,953
Number of Sequences: 438
Number of extensions: 1634
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)