Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c23r
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    31   0.22 
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    28   1.2  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.1  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    26   6.4  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.4  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 449 IFMVLNQYYKIAIFIKFPPDAELRFVKFEFHSHWKTLINKKEKLHLIFMNKKFKKRP 619
           ++M+LN+Y ++A   K P        K + H H   L N+K  L   F+  K +K P
Sbjct: 304 MYMLLNEYQELADTKKVPHRDFYNVRKVDTHVHHSALANQKHLLR--FIKAKLRKCP 358


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 577 FFLLIYKGLPVTVKFKFYKSQLCIRWK-FDKNRDFIVLI 464
           FFLL+Y   P+ ++F  YK+ + ++ +    N  FIV+I
Sbjct: 88  FFLLVYIDAPIMLRFNRYKTYVILQCQHVVANFKFIVII 126


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +2

Query: 440 CEMIFMVLNQYYKIAIFIKFPPDAELRFVKFEFHSHWKTLINKK---EKLHLIFMN 598
           CE  + + +Q + +  FI+  PD      + + H HWK    K    +KLHL  +N
Sbjct: 693 CE--YCLAHQPFLLRSFIRSLPDCLFINTQVKHHEHWKLWARKNWLPKKLHLRRVN 746


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 506 DAELRFVKFEFHSHWKTLINKKEKL---HLIFMNKKFKKRPEL*PDSN 640
           DAE++ VK +    W++++ +K ++   ++ + N  F   P + PD++
Sbjct: 128 DAEIKKVKVDISKVWRSILAEKPRVTRFNIQWDNPDFDDAPPVQPDAD 175


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 512 ELRFVKFEFHSHWKTLINKKEKLHLI 589
           E++    EF+  W+ L+N++E+L L+
Sbjct: 716 EVKDEDLEFYKKWEKLLNQEERLLLL 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,990
Number of Sequences: 5004
Number of extensions: 56856
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)