Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c23f
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    27   3.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   5.2  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   6.8  

>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 196 QYGPHARVLLAVSLVYFSRNTHRLHY 119
           QY P  + LL + ++ F  +TH  HY
Sbjct: 115 QYTPARKYLLVLPIILFLMSTHYTHY 140


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +2

Query: 320 ENTAEKVFINRAKR-ILIVSSDGHLAQWRCAPTFESANRYIAGTPIVDQRGGVISVVVAK 496
           +NT    F ++ ++ I  VS DG L  W+ +P F+ A   I      ++    I ++   
Sbjct: 190 KNTVVSGFFSKDQQTIYTVSKDGALFVWKYSPLFQ-AGEVIDEEAEENKTRTHIWLI--- 245

Query: 497 KNNHYAVSSFEGEGGYFESTQNWKVVEPAAGGYAYGELTFPSRTAL 634
           K  HY   + +     F  T N  VV  ++G +   EL  PS T L
Sbjct: 246 KERHYFNQNSKLRCAAFHPTSNLLVVGFSSGLFGIYEL--PSFTML 289


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 148 NTREKRQEVRERGVHTADTLLPARR 222
           N REKRQE+ E  V+    +L  R+
Sbjct: 53  NRREKRQELAEEAVYCRSEMLSQRK 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,729
Number of Sequences: 5004
Number of extensions: 50815
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)