Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18c23f
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0163 + 7320615-7321673 34 0.11
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 32 0.44
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 31 1.3
01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855... 29 4.1
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 4.1
12_02_0529 - 20067974-20068588,20069982-20070048,20070156-200702... 29 5.4
10_08_1037 - 22477358-22478752 29 5.4
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067... 29 5.4
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 29 5.4
07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444... 28 9.4
02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196 28 9.4
>02_02_0163 + 7320615-7321673
Length = 352
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = -2
Query: 643 VLAEGGAARESQLPVRIAACSRFNHLPVLCALKVSAFTLEGGDGIVVVFLRHNDGDDAPA 464
V A G R S++ VR C F A ++ TL DG+V V R D+
Sbjct: 230 VAASMGKLRGSRVSVREIQCGEFAVSAQFLAARIPGLTLAVADGLVDVLRRKGFVDEKGF 289
Query: 463 LVDDGRA 443
L +DGR+
Sbjct: 290 LKNDGRS 296
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +3
Query: 156 RETARSTRAWGPYCRYTAARPKSWSDALRARTTTAACSPTNCWRRSRNWPTLDSTRILLR 335
R A R GP A +SW+ + A SP C+RR + W +L S+ R
Sbjct: 237 RPHANVRRTNGPRSSPAAMAMESWARSASDAAADAGASP-GCFRRIKIWSSLSSSSSCSR 295
Query: 336 RSS 344
RS+
Sbjct: 296 RSA 298
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +2
Query: 578 PAAGGYAYGELTFPSRTALRE 640
PA GGYA TFPS ALRE
Sbjct: 27 PAGGGYAGDNATFPSLQALRE 47
>01_06_1664 -
38984545-38984615,38984706-38984802,38985362-38985523,
38985736-38985825,38986125-38986226,38986373-38986446,
38986587-38986615,38986766-38986989
Length = 282
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +2
Query: 92 TVLNENYKGIVESMSIPAEIHERNGKKYASVGSILPIHCC--PPEELERRAESTHHYCGV 265
T L+ +K V M IH NGK+YA I I C ++ + S
Sbjct: 162 TALDLYFKYNVTEMLASGGIHVSNGKQYALTDVIDAIKCAFGASPQIVCKKGSVEELRLC 221
Query: 266 FTDELLAPLEELAYVRLDENTAEKVFINR 352
F D+ L PL+ L +EN ++K + R
Sbjct: 222 F-DKDLKPLDCLTTTATNENVSKKKYCPR 249
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +3
Query: 519 PPSRVKADTLRAHKTGRWLNRLQAAMR 599
P RVKA +KT RWLN L A R
Sbjct: 244 PGQRVKAVNSSVYKTSRWLNGLWKASR 270
>12_02_0529 -
20067974-20068588,20069982-20070048,20070156-20070264,
20070357-20070402,20070501-20070636,20070745-20070866,
20070944-20071306,20071914-20072043,20072129-20072202,
20072620-20072709,20072836-20072875,20073047-20073117,
20074248-20074277
Length = 630
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 651 GCAGARERGGDAVPVLRGGTSPRLALVLDG 740
G A A ER G A PV+ GG PR DG
Sbjct: 524 GGAKAAERSGRAEPVVGGGGGPRTMTAGDG 553
>10_08_1037 - 22477358-22478752
Length = 464
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 743 PAVQHQREARRRAPPQHGHGVPPTL 669
P QHQ R PPQH PP++
Sbjct: 243 PQPQHQHHPHRPLPPQHQQPKPPSM 267
>08_02_0468 -
17505905-17506002,17506295-17506424,17506662-17506778,
17506881-17506959,17507546-17507654,17507857-17507969,
17510510-17510570,17511562-17511742,17512903-17512960,
17514292-17514497,17514582-17514671,17514752-17514813,
17514911-17514979,17515330-17515334,17516282-17516454
Length = 516
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 448 RAGDVPVRRLEGRRAPPLRQVPVA*-HYQYALGSVYEDLLSSILVESNVGQFLERR 284
+A +P+R R P ++ A HY Y+L S+YE +L I+ S ++RR
Sbjct: 157 KAATMPIRSRGVRWNKPRYELTAALFHYSYSLQSLYESILQEIM-NSAPSNSIQRR 211
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = -3
Query: 201 IGSMDPTLAYFLPFLSCISAGILIDSTMPL*FSFSTVRLDIAVFLENKSEN 49
+G M + +F F +C G+L +S++ F T+R+D+ + + ++N
Sbjct: 524 LGMMRWGVVFFFSFSNCSICGLLYESSVKHIVFFCTIRVDLVLHTFDGNKN 574
>07_01_0597 +
4438858-4439847,4439936-4440067,4440397-4441176,
4441359-4441646,4441710-4441808
Length = 762
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -2
Query: 517 DGIVVVFLRHNDGDDAPALVDDGRAGDVPVRRLEGRRAPPLRQVPVA 377
DG V+F+R D D+ V R D P+R RR+ P +PVA
Sbjct: 200 DGDSVIFMRRRDDDELYVGVRRQRTLDKPLRT---RRSRPPTPLPVA 243
>02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196
Length = 933
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 218 EELERRAESTHHYCGVFTDELLAPLEELAYVRLDENTAEKV 340
EEL+R + H++ + ++ ++A EL Y+ L +++
Sbjct: 146 EELKRAGSNPHNFANIVSNIIIAEDPELGYITLQNERLKEI 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,659,220
Number of Sequences: 37544
Number of extensions: 448441
Number of successful extensions: 1711
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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