Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c23f
         (767 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC101466-1|AAI01467.1| 1849|Homo sapiens SET binding factor 2 pr...    33   0.85 
AY234241-1|AAO62733.1| 1849|Homo sapiens SET binding factor 2 pr...    33   1.5  

>BC101466-1|AAI01467.1| 1849|Homo sapiens SET binding factor 2
            protein.
          Length = 1849

 Score = 33.5 bits (73), Expect = 0.85
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -2

Query: 625  AARESQLPVRIAACSRFNHLPVLCALKVSAFTL---EG---GDGIVVVFLRHNDGDDAP 467
            A ++S LP R+A C R N LPV+C     + TL    G   G G+V +F   N  + AP
Sbjct: 1162 AVQDSSLP-RVARCYRHNRLPVVCWKNSRSGTLLLRSGGFHGKGVVGLFKSQNSPEAAP 1219


>AY234241-1|AAO62733.1| 1849|Homo sapiens SET binding factor 2
            protein.
          Length = 1849

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = -2

Query: 625  AARESQLPVRIAACSRFNHLPVLCALKVSAFTL---EG---GDGIVVVFLRHNDGDDAP 467
            A ++S LP R+A C R N LPV+C     + TL    G   G G+V +F   N    AP
Sbjct: 1162 AVQDSSLP-RVARCYRHNRLPVVCWKNSRSGTLLLRSGGFHGKGVVGLFKSQNSPQAAP 1219


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,380,070
Number of Sequences: 237096
Number of extensions: 2158259
Number of successful extensions: 5867
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5866
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)