Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c20r
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   5.5  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   5.5  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   5.5  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   7.2  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   9.6  

>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 486 ASPNL-YIEVISSSCRVSELESDES*TDPAPDKAD 587
           ++P+L  + V SS   VSE ESD+  ++P+P + D
Sbjct: 214 STPDLDSLSVPSSESEVSEEESDQEMSEPSPIEED 248


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 649 GAVYLTLTACELAVAARVTTKLRNS 723
           G + +  TACE  +AARV  KL+ S
Sbjct: 328 GVMDVRTTACEALLAARVEQKLKGS 352


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +1

Query: 712 LRNSLSFGAILPMLKPLALLVELGSAT 792
           +RN+L+F AIL +L P ALL+ +GS +
Sbjct: 2   IRNTLAFLAILFLLIPTALLI-IGSVS 27


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +1

Query: 598 WDTPTSRARTALTRLPAGAVYLT-LTACELAVAARVTTKLRNSLSFGAILPMLKPLA-LL 771
           W    S  + A+ R P    YL  L AC + +A    +K    LSF ++L      A   
Sbjct: 168 WKISISSIQDAMHRFPVSECYLACLKACSI-LAQLFLSKETLMLSFRSLLQTKDQYAEFR 226

Query: 772 VELGSATSSVD 804
            EL  AT++ D
Sbjct: 227 EELSGATTNCD 237


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 35  FLNILPLDKTYSHIKIRAFHQARKY 109
           +L++ P  KTYS  +I  F+  R+Y
Sbjct: 456 YLSLNPFTKTYSSYRITIFNYFREY 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,231
Number of Sequences: 5004
Number of extensions: 56701
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)