Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c19r
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0197 + 1456296-1456668,1456930-1458746                           29   4.3  
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151...    29   4.3  
07_03_1393 - 26245105-26246862                                         28   9.8  

>12_01_0197 + 1456296-1456668,1456930-1458746
          Length = 729

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 409 FRFYFGIGEFFVVEIMFFSY 350
           F FY  IG FF+VE+ FF++
Sbjct: 382 FYFYGFIGVFFIVEVFFFAF 401


>11_01_0191 +
           1508509-1508749,1508852-1509204,1509860-1510002,
           1510195-1510256,1510406-1510479,1510812-1510864,
           1511072-1513550
          Length = 1134

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 409 FRFYFGIGEFFVVEIMFFSY 350
           F FY  IG FF+VE+ FF++
Sbjct: 787 FYFYGFIGVFFIVEVFFFAF 806


>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 367 FQQQKIHQYRNKNENCYSVHMSRLLSKAAICAFGQKKFIEMSYQIDLNIIVS 522
           F++ K   Y    ++C S++       + +C  G+ KF+  ++ +DLN+ +S
Sbjct: 274 FRRGKYLYYMRGGDHCKSMNQ---FIWSFLCGLGEAKFLNRTFVMDLNMCLS 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,944,665
Number of Sequences: 37544
Number of extensions: 330697
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)