Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c19r
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z70270-11|CAJ80821.1|  606|Caenorhabditis elegans Hypothetical p...    28   8.9  
Z70270-10|CAA94231.1|  726|Caenorhabditis elegans Hypothetical p...    28   8.9  
Z68215-18|CAJ80818.1|  606|Caenorhabditis elegans Hypothetical p...    28   8.9  
Z68215-17|CAA92458.1|  726|Caenorhabditis elegans Hypothetical p...    28   8.9  
AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 107 PNGQLITIIYCVQMHFYIILYLICYVMINLCLYEC 3
           PN  ++T+I    +  Y ILY+IC   +N+  Y C
Sbjct: 126 PNNVILTLILFYGLFEYFILYVICNYQLNV-PYNC 159


>Z70270-11|CAJ80821.1|  606|Caenorhabditis elegans Hypothetical
           protein C53B4.8b protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 263 TYLKLKIHQQI**W*KFQIYFSHTVQSKLITKKHDFNNKKFTNTEIKTKIATVY 424
           T+LKL +H++   + K    +S    S   ++  DF NKKFT    K ++ T+Y
Sbjct: 461 TFLKLVLHKKSVMYKKISYAYSTLSASLTNSQNLDFVNKKFTFMN-KNQMETLY 513


>Z70270-10|CAA94231.1|  726|Caenorhabditis elegans Hypothetical
           protein C53B4.8a protein.
          Length = 726

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 263 TYLKLKIHQQI**W*KFQIYFSHTVQSKLITKKHDFNNKKFTNTEIKTKIATVY 424
           T+LKL +H++   + K    +S    S   ++  DF NKKFT    K ++ T+Y
Sbjct: 461 TFLKLVLHKKSVMYKKISYAYSTLSASLTNSQNLDFVNKKFTFMN-KNQMETLY 513


>Z68215-18|CAJ80818.1|  606|Caenorhabditis elegans Hypothetical
           protein C53B4.8b protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 263 TYLKLKIHQQI**W*KFQIYFSHTVQSKLITKKHDFNNKKFTNTEIKTKIATVY 424
           T+LKL +H++   + K    +S    S   ++  DF NKKFT    K ++ T+Y
Sbjct: 461 TFLKLVLHKKSVMYKKISYAYSTLSASLTNSQNLDFVNKKFTFMN-KNQMETLY 513


>Z68215-17|CAA92458.1|  726|Caenorhabditis elegans Hypothetical
           protein C53B4.8a protein.
          Length = 726

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 263 TYLKLKIHQQI**W*KFQIYFSHTVQSKLITKKHDFNNKKFTNTEIKTKIATVY 424
           T+LKL +H++   + K    +S    S   ++  DF NKKFT    K ++ T+Y
Sbjct: 461 TFLKLVLHKKSVMYKKISYAYSTLSASLTNSQNLDFVNKKFTFMN-KNQMETLY 513


>AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical
           protein C17E7.7 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +1

Query: 436 LLSKAAICAFGQKKFIEMSY--QIDLNIIVSFKEYGSKPVLNKG**LTCYLSKMSFRRVL 609
           LL K       +KK+I   Y  +I        K++GS+P       LTC   KM FRRV+
Sbjct: 28  LLKKFCKFVSSKKKWISQFYFKRIMQKYSDIIKDFGSQPKQV----LTCDACKMFFRRVV 83

Query: 610 *LPMEY--KVNNSFF 648
              +EY  K +N+ F
Sbjct: 84  TEKLEYTCKCSNNCF 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,593,108
Number of Sequences: 27780
Number of extensions: 371871
Number of successful extensions: 855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)