Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c19f
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33265.1 68414.m04113 expressed protein contains Pfam profile...    44   1e-04
At3g43520.1 68416.m04614 expressed protein contains Pfam profile...    40   0.001
At2g26240.1 68415.m03150 expressed protein contains Pfam profile...    37   0.013
At3g57280.1 68416.m06376 expressed protein contains Pfam profile...    32   0.37 
At3g20510.1 68416.m02597 expressed protein contains Pfam profile...    31   0.64 
At2g38550.1 68415.m04736 expressed protein contains Pfam profile...    31   0.64 
At1g50740.1 68414.m05706 expressed protein contains Pfam profile...    29   4.5  
At2g33060.1 68415.m04054 leucine-rich repeat family protein cont...    28   7.9  
At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containi...    28   7.9  

>At1g33265.1 68414.m04113 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136);
           supporting cDNA gi|23198247|gb|BT000332.1|
          Length = 177

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
 Frame = +3

Query: 132 IIGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDPSNY----XXXXX 299
           ++   Y   +  GG+  Y+K+GS  SL  G+  GS+L   AY L++ P            
Sbjct: 62  VVSATYGVLLLGGGLFAYSKSGSKGSLFGGLT-GSVLMASAYFLTKSPETRVLGDTIGLG 120

Query: 300 XXXXXXXXXXYRYYNSRKFMPAGLMFCLSVGMFT 401
                     +R  +SRK +PAG +  LS+GM +
Sbjct: 121 AAFLFSSVFGFRLASSRKPVPAGPLLLLSIGMLS 154


>At3g43520.1 68416.m04614 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 240

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +3

Query: 147 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDPSNYXXXXXXXXXXXXXX 326
           YA  V  GG+MGY K+GS  SL AG +  ++L    Y  SQ P+                
Sbjct: 144 YAFLVGVGGLMGYLKSGSQKSLLAGGLSAAVL---LYVFSQLPTKPVLASTVGVVMAGAL 200

Query: 327 XY----RYYNSRKFMPAGLMFCLS 386
            Y    RY  S+K  PAG++  +S
Sbjct: 201 MYVMGTRYMRSKKIFPAGVVSIMS 224


>At2g26240.1 68415.m03150 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 108

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +3

Query: 144 AYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDPSN----YXXXXXXXXX 311
           AYA+ +  GG+MGY K GS  SL AG   G    +  Y  ++ P N              
Sbjct: 12  AYASLLGVGGLMGYLKRGSKISLVAG---GGSAALFYYVYTELPGNPVLASSIGIVGSAA 68

Query: 312 XXXXXXYRYYNSRKFMPAGLMFCLSVGM 395
                  RY  +RK +PAGL+  +S+ M
Sbjct: 69  LTGMMGSRYLRTRKVVPAGLVSVVSLVM 96


>At3g57280.1 68416.m06376 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 226

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 138 GFAYAATVAAGGVMGYAKAGSIPSLGAGIIFG 233
           G  Y   V +GG++G+A + ++ SL  G+++G
Sbjct: 106 GIPYGGLVVSGGLLGFAFSRNLTSLSTGVLYG 137


>At3g20510.1 68416.m02597 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 119

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
 Frame = +3

Query: 147 YAATVAAGGVMGYAKAGSIPSL--GAG----IIFGSILGVGAYQLSQDPS-NYXXXXXXX 305
           Y   +  GG +GY K GSI S   GAG    +I    + + A++  ++ +          
Sbjct: 10  YGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTIAMVLQTVIA 69

Query: 306 XXXXXXXXYRYYNSRKFMPAGLMFCLSVGMFTKLLLK-NVGASRMPIKS 449
                    RY  + K MPAGL+  +S  M    + K   G ++ P K+
Sbjct: 70  AALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAKA 118


>At2g38550.1 68415.m04736 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 335

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 135 IGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 242
           +G  Y   +  GG + +  +GSIP++  G+I G  L
Sbjct: 207 VGIPYGLLLLVGGFINFMVSGSIPAIRFGVILGGAL 242


>At1g50740.1 68414.m05706 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 119

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 147 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAY 257
           Y   +  GG +GY K GSI SL  G   G ++ +  +
Sbjct: 10  YGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGF 46


>At2g33060.1 68415.m04054 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 808

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 715 HLDKKNFIEMSYQIDLNIIVSFK 647
           HLD  +F++ SY IDLN+  SFK
Sbjct: 246 HLDL-SFLKTSYPIDLNLFSSFK 267


>At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 619

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 126 LDIIGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVG 251
           +D +GFA    + +  + GY K+G + S  + +I  S+ GVG
Sbjct: 249 MDGLGFASRRILYSSMISGYVKSGDLDS-ASDVILCSLKGVG 289


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,612,901
Number of Sequences: 28952
Number of extensions: 270103
Number of successful extensions: 651
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)