Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c16r
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   4.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
 Frame = +1

Query: 34  FANAFTNVEPED--DFSSNQNI*CGL-----FDCLPFPCSCLSTCDQITDALSN 174
           F   F N E +D  DF       CG+     ++  P P SC ++ +  T ++SN
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCCNSPENNTCSISN 176


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 13  SYPTRVTFANAFTNVEPEDDFSSNQNI*CGL-FDC 114
           S+PT  +      NVE E++++  ++I   L +DC
Sbjct: 98  SFPTARSLEKLLCNVEAEENYNLLEDIYETLSYDC 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,528
Number of Sequences: 438
Number of extensions: 1401
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)