Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18c14f
(356 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.14
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 31 0.18
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 31 0.18
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 0.31
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 26 6.7
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 8.9
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 26 8.9
AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical ... 26 8.9
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.9 bits (69), Expect = 0.14
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 23 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 127
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.18
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +2
Query: 8 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 178
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 179 GRQHCVTVDCCCHGS 223
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 5 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 184
KE+G CI G G C + +G R + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 185 QHC 193
+HC
Sbjct: 1195 EHC 1197
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.18
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +2
Query: 8 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 178
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 179 GRQHCVTVDCCCHGS 223
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 5 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 184
KE+G CI G G C + +G R + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 185 QHC 193
+HC
Sbjct: 1195 EHC 1197
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -1
Query: 221 YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 69
YH +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -3
Query: 93 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 4
L+E DP C ++ +++P++ +E +F
Sbjct: 68 LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 289 EKVRSWSDVENG*CLASPHGVGATMAAAVN 200
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 289 EKVRSWSDVENG*CLASPHGVGATMAAAVN 200
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 289 EKVRSWSDVENG*CLASPHGVGATMAAAVN 200
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical
protein K06A5.1 protein.
Length = 629
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 92 SGSRARFQLSGNSG 133
S SR RF+LSGNSG
Sbjct: 308 SRSRGRFELSGNSG 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,951,839
Number of Sequences: 27780
Number of extensions: 148781
Number of successful extensions: 276
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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