Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c11r
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   3.9  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   5.1  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   5.1  
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   6.8  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   6.8  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.8  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 520 PVVVSQVKYLMFTLPLTIPNSLRRITTRM*ASYE*HMPSTSAQISSRV 377
           P ++  V YL+ T+  T+P +L  I   M A+ +   PS  A  + R+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 283 PSDALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWI 390
           PSDA    T VP  + S   PW  TTP     P W+
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 604 PTTTTFQLLPVSMENXTILHTVALSLDLPVVVSQVKYLMFT--LPLTIPNSL 455
           P+  T  +L       +IL T+  SL   +VVS   Y +FT  LP T   S+
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSV 140


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 434 HPCRNSPQRIGDG*RQSEHKIFHLA--HYDGKIQR 532
           H C  +P+ I  G RQ E  ++H+A   +D KI R
Sbjct: 11  HLCMRNPKLIRIGLRQVESIVYHVAKPSHDDKIPR 45


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 212 DHDPYTGSCSFLCWS 256
           DH+PYT S S +C S
Sbjct: 91  DHEPYTASLSHICHS 105


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 212 DHDPYTGSCSFLCWS 256
           DH+PYT S S +C S
Sbjct: 91  DHEPYTASLSHICHS 105


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 594 LPFNCYLFPWRIXRSCIPSHYRWIFP 517
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,051
Number of Sequences: 5004
Number of extensions: 74011
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)