Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c11r
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -1

Query: 674  WSKFEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEXYDPAYRR 537
            WS    FL  L+ W    A  V+      S   C++G    PAYRR
Sbjct: 926  WSCRCKFLQELSSWVSDNAHKVVD----ASDVWCYYGGDARPAYRR 967


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +1

Query: 82  FPKDTIALPTHFGRRQGHPSQY--YRXSRP 165
           +P     LP  +   Q HPSQY  +R S P
Sbjct: 305 YPSTAGFLPPSYHPHQHHPSQYHPHRGSSP 334


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 367 WIIAPCWIFGPKWMACVTRTMLTSL 441
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 367 WIIAPCWIFGPKWMACVTRTMLTSL 441
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 367 WIIAPCWIFGPKWMACVTRTMLTSL 441
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 420 SNTCHPLRPKYPAGCYYPTRCRNTPGYF 337
           S++C        +  Y  T CR  PGYF
Sbjct: 276 SHSCEACPAHSKSSDYGFTECRCDPGYF 303


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 136 PSQYYRXSRPPSRT 177
           P++YY  SR P RT
Sbjct: 411 PAKYYLKSRDPERT 424


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 584 LKGSGSW*EQYQRTVGTIDSR 646
           +K SG W  +Y R +   D R
Sbjct: 288 VKNSGQWLREYDRELEDFDGR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,055
Number of Sequences: 438
Number of extensions: 5724
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)