Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c09r
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    28   1.4  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   4.1  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    27   4.1  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        26   5.5  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    26   7.2  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.6  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 804 LYERPGELVAQFKFTALLLPSGTHRITGLPFDKSQCKSERSIKDPE 667
           L ++ G +VA+F  T  L   GT  ++     +   KS++ ++DPE
Sbjct: 310 LLDKDGGIVAEFYSTIALTKKGTIILSDSEPKEDFIKSDKKVEDPE 355


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 392 PRSEKILGLFVGTKLDIYSHNYKSRCGCLSKKLHNFCYFC 511
           PR   +L   V  +LD       S CG L+++ HNF   C
Sbjct: 95  PRLVVVLPWTVLQELDGLKSESSSTCGYLARQAHNFLLQC 134


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 160 EVFVHNYISSGMINLIIIKFYHKTYLHVHKNNCIFIYL 273
           ++ + N    GM+      FY K Y H H+ N  F+ L
Sbjct: 569 KILILNNEEQGMVTQWQNLFYEKRYSHTHQKNPNFVKL 606


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 482 Y*DNHILTYS-YVNKYLALYLQTNPRSSLILA*TPECL 372
           Y +N ILT +  V+ YL  YLQ NP  + IL   P+ L
Sbjct: 77  YMENGILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVL 114


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
 Frame = -1

Query: 650 IHQQN---LTRRRKR-KQELKSPWKWRLLPSKNT*VPRNK*Y*HFSTI*MDKNNKNCAIF 483
           +HQ+N   L RR++R K+E K P K RL  S+N          +  TI  DK ++     
Sbjct: 18  LHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIEDKPDEELQAE 77

Query: 482 Y*DNHILTY-SYVNKYLALYLQTNPRSS 402
             D+    Y S   K   L + T+ R+S
Sbjct: 78  LKDDEFSAYFSEERKVPKLLVTTSKRAS 105


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 565 IHKCPGINDINIFPQYKWTKITKIVQFF 482
           +++ PG ND++++P ++   I  I+  F
Sbjct: 449 VNEIPGWNDVDLYPLFRALSIPNILVLF 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,910
Number of Sequences: 5004
Number of extensions: 68321
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)