Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18c09f
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 204 1e-53
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 97 3e-21
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 66 4e-12
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 35 0.015
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 32 0.11
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 29 0.75
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 5.3
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 26 5.3
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.0
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 7.0
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 7.0
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 7.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 7.0
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 9.2
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.2
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 9.2
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 204 bits (498), Expect = 1e-53
Identities = 103/231 (44%), Positives = 144/231 (62%), Gaps = 2/231 (0%)
Frame = +2
Query: 65 EMADEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEET 244
E E V+ +++ V KYK+AG++ V+++V+ C P A +IC GD+L+ E
Sbjct: 5 EATSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAI 64
Query: 245 NKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPD--YILKKGDLAKIDLGAHIDGFI 418
KV++ KD+ KGIAF T VS N+ H SP+ S+P+ LK GD+ KI LGAHIDGF
Sbjct: 65 KKVYRT-KDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFA 123
Query: 419 AVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKP 598
++VA T VV E V+G AADV KPG N+ VT+ + KI+ YGCKP
Sbjct: 124 SLVATTTVVSEEPVTGPAADVIAAASAALKAAQRTIKPGNTNWQVTDIVDKIATSYGCKP 183
Query: 599 IEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLIST 751
+ GMLSHQ ++ IDG+K +I NPS++QR E + T E+ EVY +D+L+ST
Sbjct: 184 VAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVST 234
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 96.7 bits (230), Expect = 3e-21
Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Frame = +2
Query: 74 DEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKV 253
D + + + +KY+ AG +V++ QV ++CVP AS REI +GD L+ E + +
Sbjct: 4 DPSDSNSRVVDASQFSKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSI 63
Query: 254 FKKEKDSKKGIAFSTCVSVNNCICHFSP------IASEPDYILKKGDLAKIDLGAHIDGF 415
+K ++ +KGIA T + VNNC +++P ++ Y L+ GD+ KI +G H DG+
Sbjct: 64 YKSQR-FEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGY 122
Query: 416 IAVVAHTVVV 445
A+++HT+VV
Sbjct: 123 TALISHTIVV 132
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 66.5 bits (155), Expect = 4e-12
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 5/185 (2%)
Frame = +2
Query: 233 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 412
+E T + +E K GI F T VS+N+C H++P A + ILK+ D+ K+D+G H++G
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNG 206
Query: 413 FIAVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAE--- 583
I A T+ + + A V + A+ E ++ E
Sbjct: 207 RIVDSAFTMSF-DPQYDNLLAAVKAATNKGIEEAGIDARLNEIGEAIQEVMESYEVEING 265
Query: 584 --YGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLISTGE 757
+ K I + H L + I G KS+ P K E+ +E+ E++A++ STG
Sbjct: 266 KTHQVKSIRNLCGHNLDPYIIHGGKSV---PIV---KGGEEIKMEEGEIFAIETFGSTGR 319
Query: 758 AVGRE 772
V E
Sbjct: 320 GVVHE 324
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 34.7 bits (76), Expect = 0.015
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 293 STCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGE 451
S C SVN ICH P P L+ GD+ ID+ + +GF + T VG+
Sbjct: 181 SVCTSVNEIICHGIP-DQRP---LEDGDIVNIDVSLYHNGFHGDLNETYYVGD 229
>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -2
Query: 598 WLTTIFSTYFLNGFSDCIVLSTR---LQETKSRFTSMMSCQQNICSTSRDFTFTHNYCMS 428
W++++ L G S I LST L + K+ + M + C S +T + N C +
Sbjct: 5 WVSSLLG---LLGLSTAIPLSTEADALLDRKTIYFGMKAYDDVNCKGSTSYTISFNKCQA 61
Query: 427 YNSYKSINVST 395
Y + SIN T
Sbjct: 62 YPNINSINALT 72
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 29.1 bits (62), Expect = 0.75
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = -1
Query: 377 NLLFSECNPVRSQWAKSDKCSCSQKRMLKM 288
+L+ S+C V+ QW+ ++CSCS + +L++
Sbjct: 2135 DLICSKCKTVK-QWSLKERCSCSGEWVLQL 2163
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 180 AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 275
AF T +Q Y N NLY+ ++ S R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 74 DEKEV-EKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPD 190
D+K + K I ++L V + AG++++++ E KC+P+
Sbjct: 16 DKKSIFMKQIRQELAVAQ---AGELISKINENCFDKCIPE 52
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 439 YCMSYNSYKSINVSTKIYLG*ISF 368
YC +YKS+ + T +Y+G F
Sbjct: 144 YCRKVLTYKSLGIRTAVYVGAFCF 167
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -1
Query: 605 PQLAYNHIQHLFSE---WLQ*LHSSQYQASGDEEPLH*HDELPTKHLQHVQRLHFHPQLL 435
P LAY + + FS + +SS + +P ++ L ++ LQ +LH+H +L
Sbjct: 375 PSLAYLQVVYSFSMRALLVNRQYSSAFAFFWKIDPYIRNERLVSQMLQAASQLHYHDLIL 434
Query: 434 Y 432
Y
Sbjct: 435 Y 435
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -2
Query: 670 WILYNTLLSINTELLQLV*EHTLNWLTTIFSTYF 569
W++Y+ L+ + E + V WL + T+F
Sbjct: 1095 WVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFF 1128
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 229 KFIAKFTYFSC*CVWNAFCDDLLKDSVHYLSC*LV 125
K + KF+ C +++A C+D L S H C +V
Sbjct: 472 KCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVV 506
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 762 TASPVDIRTSIAYTSYFSSVAFSCSLRCASDGFCIILFSP 643
TASP+ +RTS ++Y + + S C S P
Sbjct: 216 TASPIPVRTSSVSSTYLTQDREASSKNCLSKALAFSSIEP 255
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 9.2
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Frame = +2
Query: 527 KPGTENYAVTEAIQ--KISAEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEK 700
K EN E + K + PI+ QLK+F +I ++ E + + EK
Sbjct: 474 KQAVENSPFLEIFRAKKFDVLFMVDPIDEYAVTQLKEFEGKKLVNITKDGLELEETDEEK 533
Query: 701 ATLEK----YEVYAMDVLISTGEAV 763
A EK YE +A + G+ V
Sbjct: 534 AAREKLEKEYEEFAKQLKTILGDKV 558
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 191 ASAREICEFGDKLVLEETNKVFKKEKD 271
++ +E FG+KL E T K+ EKD
Sbjct: 865 SNLQEKINFGNKLAKEHTEKISSLEKD 891
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 347 EPDYILKKGDLAKIDLGAHIDGFIAVVAHTVV 442
EP+Y+L G+L+ +L ID F T V
Sbjct: 382 EPEYLLMYGNLSNEELVERIDAFYMNARRTYV 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,692
Number of Sequences: 5004
Number of extensions: 65168
Number of successful extensions: 222
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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