Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c04f
         (357 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024990-1|ABE01220.1|  347|Drosophila melanogaster IP11205p pro...    27   7.0  
BT016166-1|AAV37051.1|  930|Drosophila melanogaster AT02824p pro...    27   7.0  
BT012322-1|AAS77447.1|  820|Drosophila melanogaster AT28002p pro...    27   7.0  
BT011414-1|AAR96206.1|  753|Drosophila melanogaster AT18471p pro...    27   7.0  
BT011402-1|AAR96194.1|  932|Drosophila melanogaster AT24447p pro...    27   7.0  
AY118944-1|AAM50804.1|  941|Drosophila melanogaster LD29915p pro...    27   7.0  
AF255673-1|AAG18328.1| 1011|Drosophila melanogaster rho guanine ...    27   7.0  
AE014298-2829|AAN09486.1|  347|Drosophila melanogaster CG32537-P...    27   7.0  
AE014296-79|AAN11436.1|  925|Drosophila melanogaster CG1225-PC, ...    27   7.0  
AE014296-78|AAN11435.1|  930|Drosophila melanogaster CG1225-PE, ...    27   7.0  
AE014296-77|AAN11434.1|  932|Drosophila melanogaster CG1225-PB, ...    27   7.0  
AE014296-76|AAF47374.1| 1011|Drosophila melanogaster CG1225-PA, ...    27   7.0  

>BT024990-1|ABE01220.1|  347|Drosophila melanogaster IP11205p
           protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 6   TARNVTRSPVSREAKRRPRQMNSLEITRSQNMYEFT 113
           T  + TR P S   KR+PR   S +  + Q +Y+ T
Sbjct: 263 TKASSTRHPSSSVHKRKPRSQQSQQSEQEQRIYKRT 298


>BT016166-1|AAV37051.1|  930|Drosophila melanogaster AT02824p
           protein.
          Length = 930

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 115 FVNSYIFCERVI--SSEFIWRGRLFASR 38
           F N  ++C+R I   S FI++GR+F  R
Sbjct: 699 FDNQLVYCKRDIIKRSHFIYKGRIFLDR 726


>BT012322-1|AAS77447.1|  820|Drosophila melanogaster AT28002p
           protein.
          Length = 820

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 115 FVNSYIFCERVI--SSEFIWRGRLFASR 38
           F N  ++C+R I   S FI++GR+F  R
Sbjct: 589 FDNQLVYCKRDIIKRSHFIYKGRIFLDR 616


>BT011414-1|AAR96206.1|  753|Drosophila melanogaster AT18471p
           protein.
          Length = 753

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 115 FVNSYIFCERVI--SSEFIWRGRLFASR 38
           F N  ++C+R I   S FI++GR+F  R
Sbjct: 522 FDNQLVYCKRDIIKRSHFIYKGRIFLDR 549


>BT011402-1|AAR96194.1|  932|Drosophila melanogaster AT24447p
           protein.
          Length = 932

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 115 FVNSYIFCERVI--SSEFIWRGRLFASR 38
           F N  ++C+R I   S FI++GR+F  R
Sbjct: 701 FDNQLVYCKRDIIKRSHFIYKGRIFLDR 728


>AY118944-1|AAM50804.1|  941|Drosophila melanogaster LD29915p
           protein.
          Length = 941

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 115 FVNSYIFCERVI--SSEFIWRGRLFASR 38
           F N  ++C+R I   S FI++GR+F  R
Sbjct: 780 FDNQLVYCKRDIIKRSHFIYKGRIFLDR 807


>AF255673-1|AAG18328.1| 1011|Drosophila melanogaster rho guanine
           nucleotide exchangefactor 3 protein.
          Length = 1011

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 115 FVNSYIFCERVI--SSEFIWRGRLFASR 38
           F N  ++C+R I   S FI++GR+F  R
Sbjct: 780 FDNQLVYCKRDIIKRSHFIYKGRIFLDR 807


>AE014298-2829|AAN09486.1|  347|Drosophila melanogaster CG32537-PA
           protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 6   TARNVTRSPVSREAKRRPRQMNSLEITRSQNMYEFT 113
           T  + TR P S   KR+PR   S +  + Q +Y+ T
Sbjct: 263 TKASSTRHPSSSVHKRKPRSQQSQQSEQEQRIYKRT 298


>AE014296-79|AAN11436.1|  925|Drosophila melanogaster CG1225-PC,
           isoform C protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 115 FVNSYIFCERVI--SSEFIWRGRLFASR 38
           F N  ++C+R I   S FI++GR+F  R
Sbjct: 694 FDNQLVYCKRDIIKRSHFIYKGRIFLDR 721


>AE014296-78|AAN11435.1|  930|Drosophila melanogaster CG1225-PE,
           isoform E protein.
          Length = 930

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 115 FVNSYIFCERVI--SSEFIWRGRLFASR 38
           F N  ++C+R I   S FI++GR+F  R
Sbjct: 699 FDNQLVYCKRDIIKRSHFIYKGRIFLDR 726


>AE014296-77|AAN11434.1|  932|Drosophila melanogaster CG1225-PB,
           isoform B protein.
          Length = 932

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 115 FVNSYIFCERVI--SSEFIWRGRLFASR 38
           F N  ++C+R I   S FI++GR+F  R
Sbjct: 701 FDNQLVYCKRDIIKRSHFIYKGRIFLDR 728


>AE014296-76|AAF47374.1| 1011|Drosophila melanogaster CG1225-PA,
           isoform A protein.
          Length = 1011

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 115 FVNSYIFCERVI--SSEFIWRGRLFASR 38
           F N  ++C+R I   S FI++GR+F  R
Sbjct: 780 FDNQLVYCKRDIIKRSHFIYKGRIFLDR 807


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,892,726
Number of Sequences: 53049
Number of extensions: 196859
Number of successful extensions: 272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 880179048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)