Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c04f
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    29   0.95 
AL132902-7|CAB81993.1|  485|Caenorhabditis elegans Hypothetical ...    26   8.9  

>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 46  RKGVPAR*IRLRLRAHKICMNLQKHK 123
           RK  P R  RLRLR H++     KHK
Sbjct: 605 RKQAPTRRTRLRLRRHRLINKKSKHK 630


>AL132902-7|CAB81993.1|  485|Caenorhabditis elegans Hypothetical
           protein Y71A12B.8 protein.
          Length = 485

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 57  PRQMNSLEITRSQNMYEFTKAQDILIN*LLAHFFFC 164
           P Q +SL + ++    +  + + + IN L  HF+FC
Sbjct: 438 PNQKSSLAVGQTPTSCDQCQFKSLNINTLNTHFYFC 473


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,040,768
Number of Sequences: 27780
Number of extensions: 113519
Number of successful extensions: 207
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)