Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c04f
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   0.82 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   0.82 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   4.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   4.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   4.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   7.6  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 76  LRLRAHKICMNLQKHKTY*SINS 144
           LRL+A + CMN ++     +INS
Sbjct: 487 LRLKARRACMNYERFTYKININS 509


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 76  LRLRAHKICMNLQKHKTY*SINS 144
           LRL+A + CMN ++     +INS
Sbjct: 487 LRLKARRACMNYERFTYKININS 509


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 184 LSTFILHPAY*AMYRTNIRFNQINVVFKLL 273
           L TF+LHP+     + N R  +  V+  +L
Sbjct: 11  LLTFLLHPSRCTQGKVNYREKEKEVLDNIL 40


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 184 LSTFILHPAY*AMYRTNIRFNQINVVFKLL 273
           L TF+LHP+     + N R  +  V+  +L
Sbjct: 11  LLTFLLHPSRCTQGKVNYREKEKEVLDNIL 40


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 6   TARNVTRSPVSREAKRRPRQMNSL 77
           T++  +R  + RE  R P+ ++SL
Sbjct: 295 TSKERSRDRIERERSREPKIISSL 318


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 45  PRARLDCALHC 13
           PR + +C LHC
Sbjct: 341 PRRKNNCPLHC 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,086
Number of Sequences: 438
Number of extensions: 1460
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)