Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c01r
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.23 
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    31   0.30 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.30 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    30   0.52 
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    29   0.91 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    28   1.6  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    28   2.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   2.1  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    27   3.7  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   4.9  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   4.9  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   6.4  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    26   6.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   6.4  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    26   8.5  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    26   8.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   8.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +1

Query: 340 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 483
           SS S++ S+  STS   S SS  +S   ST ++   SSS+S+ +S+ L
Sbjct: 274 SSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +1

Query: 304 STMGLTT*TGLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
           ST+  ++ +   SS S+T S+ +S+S   S  S  +S   ST+TS   SSS  A  S+
Sbjct: 341 STISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSS 398



 Score = 29.1 bits (62), Expect = 0.91
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +1

Query: 340 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNS 462
           SS S++ S+  STS   S SS  +S   ST++S   SSS+S
Sbjct: 291 SSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS 331



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +1

Query: 304 STMGLTT*TGLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYS 474
           S+  LT+ +   SS  +T S+  STS + S SS  ++   S+ +S   SSS+S+  S
Sbjct: 226 SSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 340 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAG 468
           +SGSAT +TG +T+ ++S  S  +S   S+  S   S+  +AG
Sbjct: 365 TSGSATSATGSATTTSYSSDSSASSSSSSSHESSAASNGFTAG 407


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +1

Query: 337 KSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAG 468
           KSS S++ S+  S S + SKSS   S   S ITS  P+SS+S+G
Sbjct: 197 KSSSSSSSSSKSSASPSSSKSSSKFS-SSSFITSTTPASSSSSG 239


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 416 IEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPGKRY 270
           +EA+ E +    + DLP  +VA PE++  V  +NP+ ++   E    R+
Sbjct: 219 MEAEAEAVTLEMIGDLPFAHVAPPENVLFVCKLNPVTQDEDLELIFSRF 267


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 551 NIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLV 432
           N++++   K  E +   S +G+I     P  +DED N ++
Sbjct: 89  NLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEII 128


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -2

Query: 578  DADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPE 399
            D D+    + IVD+    +NE   + S++ S+S  E+   + +DG+   I+D+  E Q E
Sbjct: 1059 DNDISSQEIKIVDDYYISSNEHSTHASDLASVSSEEF---VIDDGSS-SIIDISDELQDE 1114

Query: 398  DLEKAQL 378
               +  L
Sbjct: 1115 SSSRDSL 1121


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 118 RIHKLLVKKYKRINYLYKKCYLLNTEKL 201
           R+  L+++K + IN+  ++C  L TEK+
Sbjct: 284 RLESLILEKQEEINFWKQRCRALETEKI 311


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +1

Query: 319 TT*TGLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLIEP 492
           +T + + S  S++ S+  STS + S SS  ++   ++ +SP   SS+ +  ST L  P
Sbjct: 571 STFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP 628



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +1

Query: 328 TGLKSSGSATFSTGRSTSWAFSKSSGCASIGRST--ITSPFPSSSNSAGYSTQLI 486
           T L  S S+T ST  S S + S SS  +SI  S+  ++SP PS+S+    S+ +I
Sbjct: 590 TSLSISSSSTSSTFSSASTS-SPSSISSSISSSSTILSSPTPSTSSLMISSSSII 643



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +1

Query: 322  T*TGLKSS---GSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLIEP 492
            T TG ++S   GS T S   S+SW    SS   +   +   +P  SSS S+  S+  ++P
Sbjct: 906  TSTGSETSSVVGSGTDSA-TSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDP 964


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 314 PIVENSQSEYPGKRYPDATWR 252
           PI+E+S ++YP    P A WR
Sbjct: 89  PIIESSMNKYPLNGRPQAFWR 109


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 334 LKSSGSATF-STGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLI 486
           + S+G++T  ST  ST  +  + +   +   +T   P PS+S+   Y+T+ I
Sbjct: 235 ITSTGASTVTSTQPSTVTSTQRKNTATTTKTTTYVGPSPSASSVVAYTTKCI 286


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 380 LVDLPVENVAEPEDLSP--VQVVNPIVENSQSEYPGKR 273
           L+DL   +VAEP D  P   QV +  V++S S +P  +
Sbjct: 429 LMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPSSQ 466


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 328 TGLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
           + + SS SAT  +  S+S   S SS  +    S ITS   SSS  +  S+
Sbjct: 46  SSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSS 95


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 830 FPLTTSIFPVDSVNFVENVEAPVENADFP 744
           FP++ SI P+  VN  + +E+P   A FP
Sbjct: 249 FPISPSISPLQKVNKQQQIESP--TATFP 275


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = +3

Query: 705 WSIEVFYEAYRVSREIGILNWSFDIFYEVYRINRENRRCQREFQCQKSQRCL 860
           W+I   + +YR    + I     D    V R +  +  CQ E  C  + R +
Sbjct: 27  WNISKTFLSYRTLTALAIETSCDDTSVSVVRTSDSSSHCQNEIICLNTHRTI 78


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 361 STGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
           S+  S++ + S SS  +S   +T TSP  SSS+S+  S+
Sbjct: 129 SSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSS 167


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 461 ELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQS 291
           E D+D  G+ + +     +P DL+K   V+L +E   +  D   VQ  + +V N +S
Sbjct: 260 EQDQDLAGMYLTERLKTGKPRDLDKHDEVELLLETYCKQVD-EIVQQTDNLVGNIRS 315


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 542 DEPVEKTNEEIENDSEVGSISWVEYP--AELDEDGNGLVIVDLPIEAQ 405
           +E  EKT+ E +ND E+ +   +E    AE  +D + L  ++  IE Q
Sbjct: 133 EEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQ 180


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 830 FPLTTSIFPVDSVNFVENVEAP 765
           FP+T+S+ P + VNF   ++ P
Sbjct: 332 FPITSSVHPGEDVNFTVALKVP 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,833
Number of Sequences: 5004
Number of extensions: 67115
Number of successful extensions: 269
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)