Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18c01r
         (909 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetit...    35   0.47 
AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetit...    35   0.47 
BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetit...    33   1.1  
AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetit...    33   1.1  
AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetit...    33   1.1  
BC040168-1|AAH40168.1|  479|Homo sapiens v-ets erythroblastosis ...    33   1.9  

>AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +2

Query: 605 RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFL 784
           R+    P H RP+  HR   RS +     RRP    R   R +   P +R S+  +R   
Sbjct: 287 RTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 344

Query: 785 RSLQNQQGKSTLST 826
           RS  +  G S+ S+
Sbjct: 345 RSSASLSGSSSSSS 358


>AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +2

Query: 605 RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFL 784
           R+    P H RP+  HR   RS +     RRP    R   R +   P +R S+  +R   
Sbjct: 287 RTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 344

Query: 785 RSLQNQQGKSTLST 826
           RS  +  G S+ S+
Sbjct: 345 RSSASLSGSSSSSS 358


>BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 605 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 775
           R+    P H RP+  HR   RS   + +P   RRP    R   R +   P +R S+  +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346

Query: 776 HFLRSLQNQQGKSTLST 826
              RS  +  G S+ S+
Sbjct: 347 RRRRSSASLSGSSSSSS 363


>AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 605 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 775
           R+    P H RP+  HR   RS   + +P   RRP    R   R +   P +R S+  +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346

Query: 776 HFLRSLQNQQGKSTLST 826
              RS  +  G S+ S+
Sbjct: 347 RRRRSSASLSGSSSSSS 363


>AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 605 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 775
           R+    P H RP+  HR   RS   + +P   RRP    R   R +   P +R S+  +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346

Query: 776 HFLRSLQNQQGKSTLST 826
              RS  +  G S+ S+
Sbjct: 347 RRRRSSASLSGSSSSSS 363


>BC040168-1|AAH40168.1|  479|Homo sapiens v-ets erythroblastosis
           virus E26 oncogene homolog (avian) protein.
          Length = 479

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +2

Query: 512 FPHSSFQLVHPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGH 691
           FP++S   V+P  +Q   +  RP L +    RS     GH  PQ +  +   S   +   
Sbjct: 231 FPNTS---VYPEATQR--ITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVPKTED 285

Query: 692 RRPQLEHRGFLRSLQSQPGNRHS-QLELRHFLRSLQNQQGKSTLST 826
           +RPQL+    L    S+  N  S Q++L  FL  L +    S+  T
Sbjct: 286 QRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNSSCIT 331


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,657,471
Number of Sequences: 237096
Number of extensions: 2116372
Number of successful extensions: 5528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5489
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)