Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18c01r
(909 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 39 0.006
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 33 0.28
Z19156-2|CAE17940.2| 275|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 31 1.1
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 31 1.1
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 31 1.1
Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF016445-4|AAC69058.1| 312|Caenorhabditis elegans Hypothetical ... 31 1.5
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 29 3.5
Z81502-3|CAB04104.1| 366|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z72506-7|CAA96620.2| 293|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 29 4.6
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p... 29 4.6
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p... 29 4.6
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p... 29 4.6
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr... 29 4.6
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 29 4.6
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote... 29 4.6
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 29 4.6
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 4.6
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 29 4.6
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 29 6.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 6.1
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 6.1
AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical ... 29 6.1
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 8.0
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 8.0
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 38.7 bits (86), Expect = 0.006
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = -2
Query: 602 DNVDAP-VEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIV 426
DN +A VE+ D Q+ DE + +E + +V I+ EY + +G I
Sbjct: 32 DNSNAQLVEEGDDQLVTAEADDEKSAQQVDEDRTEDQVPDITGTEYVDPMTTSMDG--IE 89
Query: 425 DLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPGK 276
DLP + + +E++ D P +P++ +P + P E Q E P +
Sbjct: 90 DLPANDEAQ-VEESAPADEPAPEEEKPQEEAPAEEPAPAEEAPQEEVPAE 138
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 33.1 bits (72), Expect = 0.28
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +1
Query: 304 STMGLTT*TGLKSSGSATFSTGRSTSWAFSKSSGCASIGR-----STITSPFPSSSNSAG 468
S+ + + TG SSGS+T + G ST A S +++ ST+T+P SSS S
Sbjct: 1513 SSTSVPSSTGATSSGSST-TVGSSTVGATQTSVSSSTVPNTGSTGSTVTNPSTSSSTSGS 1571
Query: 469 YSTQLI 486
STQ I
Sbjct: 1572 SSTQSI 1577
>Z19156-2|CAE17940.2| 275|Caenorhabditis elegans Hypothetical
protein T02C1.2 protein.
Length = 275
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = -2
Query: 587 PVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEA 408
P+ A +Q AP+++ + V + +EIEN IS V P DE+ N + I+
Sbjct: 213 PIRRAAIQPAPIHLNESLVVEVIDEIENVPVNTQISPVMPP---DEESNPVEIITCDQNQ 269
Query: 407 QPEDL 393
QP D+
Sbjct: 270 QPVDV 274
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 31.1 bits (67), Expect = 1.1
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Frame = -2
Query: 602 DNVDAP-VEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIV 426
DN +A VE+ D Q+ DE + +E + +V I+ EY + +G I
Sbjct: 32 DNSNAQLVEEGDDQLVTAEADDEKSAQQVDEDRTEDQVPDITGTEYVDPMTTSMDG--IE 89
Query: 425 DLPI--EAQPED--LEKAQLVDL--PVENVAEPEDLSPVQVVNPIVENSQSE 288
DLP EAQ ED LE+ +L D EN +L V I+E E
Sbjct: 90 DLPANDEAQFEDTILEEDELPDQLESAENQEPRSELVSSGVEEEIIEEEDIE 141
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 31.1 bits (67), Expect = 1.1
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Frame = -2
Query: 602 DNVDAP-VEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIV 426
DN +A VE+ D Q+ DE + +E + +V I+ EY + +G I
Sbjct: 32 DNSNAQLVEEGDDQLVTAEADDEKSAQQVDEDRTEDQVPDITGTEYVDPMTTSMDG--IE 89
Query: 425 DLPI--EAQPED--LEKAQLVDL--PVENVAEPEDLSPVQVVNPIVENSQSE 288
DLP EAQ ED LE+ +L D EN +L V I+E E
Sbjct: 90 DLPANDEAQFEDTILEEDELPDQLESAENQEPRSELVSSGVEEEIIEEEDIE 141
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 31.1 bits (67), Expect = 1.1
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Frame = -2
Query: 602 DNVDAP-VEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIV 426
DN +A VE+ D Q+ DE + +E + +V I+ EY + +G I
Sbjct: 32 DNSNAQLVEEGDDQLVTAEADDEKSAQQVDEDRTEDQVPDITGTEYVDPMTTSMDG--IE 89
Query: 425 DLPI--EAQPED--LEKAQLVDL--PVENVAEPEDLSPVQVVNPIVENSQSE 288
DLP EAQ ED LE+ +L D EN +L V I+E E
Sbjct: 90 DLPANDEAQFEDTILEEDELPDQLESAENQEPRSELVSSGVEEEIIEEEDIE 141
>Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -2
Query: 560 APVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQ 381
APV + E T EE N+SEV + + + ED N + + EA E ++ Q
Sbjct: 378 APVEMT--ATEDTAEETNNESEVEASTEAPFEVAATEDSNQAPVDPIFTEAPAEGSQEEQ 435
Query: 380 LVDLPV 363
D PV
Sbjct: 436 TSDGPV 441
>Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -2
Query: 560 APVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQ 381
APV + E T EE N+SEV + + + ED N + + EA E ++ Q
Sbjct: 378 APVEMT--ATEDTAEETNNESEVEASTEAPFEVAATEDSNQAPVDPIFTEAPAEGSQEEQ 435
Query: 380 LVDLPV 363
D PV
Sbjct: 436 TSDGPV 441
>AF016445-4|AAC69058.1| 312|Caenorhabditis elegans Hypothetical
protein T05B4.8 protein.
Length = 312
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 340 SSGSATFSTGRSTSWAFSKSSGCASIGRST 429
+SGS T ++G TS+ SS CAS R+T
Sbjct: 21 TSGSVTVTSGTCTSYIADSSSNCASWARTT 50
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 578 PQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRH 757
PQ+ R + QP PQ +H+R ++ Q PQ + R + Q+Q R
Sbjct: 524 PQMSQMRMQQQQPQQPNMNSPQSQHQRAPNNMNMQQNLPNPQQQMR--IPQAQNQMQQRI 581
Query: 758 SQLELRHF-LRSLQNQQG 808
Q+ + ++ QN G
Sbjct: 582 PQVSPQQMQMQQQQNMNG 599
>Z81502-3|CAB04104.1| 366|Caenorhabditis elegans Hypothetical
protein F14B6.3 protein.
Length = 366
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -2
Query: 581 EDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQP 402
ED + + DE + ++I +S+ S + ELD+D NG +L ++
Sbjct: 295 EDLEESENEPRMSDEAEKLVEDKIIEESDEDSFDIIGRDEELDDDSNGKEEEELELDVTQ 354
Query: 401 EDLE 390
ED E
Sbjct: 355 EDSE 358
>Z72506-7|CAA96620.2| 293|Caenorhabditis elegans Hypothetical
protein F07A5.6 protein.
Length = 293
Score = 29.1 bits (62), Expect = 4.6
Identities = 22/94 (23%), Positives = 42/94 (44%)
Frame = -2
Query: 569 LQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLE 390
+ + P DEP E EE ++SEV + + E +DG + D + PE++
Sbjct: 98 VSLTPDPTPDEP-EFYEEEDVDESEVVEEDYAQEEEEEGDDGEVVEYEDPVVVTPPEEIR 156
Query: 389 KAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSE 288
+ ++ + +P +S V +P +E S+
Sbjct: 157 RIS-PEILIAPPPQPRRMSKFSVHSPSIEQITSK 189
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSW-AFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
+GLK S+T S+ + S+ S+SSG ++G STI++ S +S+ YS+
Sbjct: 192 SGLKPPSSSTTSSNNTNSFRPSSRSSGNNNVG-STISTSAKSLESSSTYSS 241
>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSW-AFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
+GLK S+T S+ + S+ S+SSG ++G STI++ S +S+ YS+
Sbjct: 192 SGLKPPSSSTTSSNNTNSFRPSSRSSGNNNVG-STISTSAKSLESSSTYSS 241
>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSW-AFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
+GLK S+T S+ + S+ S+SSG ++G STI++ S +S+ YS+
Sbjct: 58 SGLKPPSSSTTSSNNTNSFRPSSRSSGNNNVG-STISTSAKSLESSSTYSS 107
>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSW-AFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
+GLK S+T S+ + S+ S+SSG ++G STI++ S +S+ YS+
Sbjct: 192 SGLKPPSSSTTSSNNTNSFRPSSRSSGNNNVG-STISTSAKSLESSSTYSS 241
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSW-AFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
+GLK S+T S+ + S+ S+SSG ++G STI++ S +S+ YS+
Sbjct: 192 SGLKPPSSSTTSSNNTNSFRPSSRSSGNNNVG-STISTSAKSLESSSTYSS 241
>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSW-AFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
+GLK S+T S+ + S+ S+SSG ++G STI++ S +S+ YS+
Sbjct: 192 SGLKPPSSSTTSSNNTNSFRPSSRSSGNNNVG-STISTSAKSLESSSTYSS 241
>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSW-AFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
+GLK S+T S+ + S+ S+SSG ++G STI++ S +S+ YS+
Sbjct: 58 SGLKPPSSSTTSSNNTNSFRPSSRSSGNNNVG-STISTSAKSLESSSTYSS 107
>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSW-AFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
+GLK S+T S+ + S+ S+SSG ++G STI++ S +S+ YS+
Sbjct: 192 SGLKPPSSSTTSSNNTNSFRPSSRSSGNNNVG-STISTSAKSLESSSTYSS 241
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 304 STMGLTT*TGLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYS 474
+T G T TG S GSA STG + + S ++G + G S+ +P P+S+ G S
Sbjct: 36 NTGGNTNTTGGFSFGSAQPSTGSTGLFGNSTATG-SMFGGSSAAAPAPASAGIFGNS 91
>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
UNC-53 protein.
Length = 1583
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSW-AFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
+GLK S+T S+ + S+ S+SSG ++G STI++ S +S+ YS+
Sbjct: 192 SGLKPPSSSTTSSNNTNSFRPSSRSSGNNNVG-STISTSAKSLESSSTYSS 241
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 29.1 bits (62), Expect = 4.6
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Frame = -2
Query: 545 VDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLP----IEAQPEDLEKAQL 378
VDE K EE + + VGS+ E P + D + I LP I P +A
Sbjct: 1237 VDEIQVKEEEEDQKEETVGSVERQEPPKKPVADDHKSAIAPLPPANTIMPPPPPYNQASA 1296
Query: 377 VDL-PVENVAEPEDLSPVQ 324
V L P P L P+Q
Sbjct: 1297 VPLNPPRTALPPLQLPPLQ 1315
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 602 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDE 450
D DAP+ D +N+VDE +++ ++E+D E E+ AE D+
Sbjct: 2429 DAQDAPLAAPDAPPG-INLVDEIMQQVQRDVEDDEEDEDGDQNEHEAEEDD 2478
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 331 GLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLI 486
G +SG +T S+S + ++G S G ST+T+P SSS S STQ I
Sbjct: 831 GSSTSGQTAVTTQGSSSTQTNSNTG--STG-STVTNPPVSSSTSGSSSTQPI 879
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 331 GLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLI 486
G +SG+ +T S+S + ++G S G ST+T P SS SA STQ I
Sbjct: 887 GSSTSGTTVVTTQGSSSTQTNPNTG--STG-STVTQPSAFSSTSASSSTQPI 935
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 28.7 bits (61), Expect = 6.1
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -2
Query: 587 PVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEA 408
PVE +V P+ + + E I +D E S SW YP +L+ VI D ++
Sbjct: 566 PVESNPEEVTPMVTAPISIHSSFENISSDFESLSPSWGGYP-DLEAAQRLEVIDDNLLDF 624
Query: 407 QPEDLEKAQLVDLPVENVAEPEDLSP 330
+E + + E EPE P
Sbjct: 625 SDVAVEAQEAQEAQEEARPEPEQSLP 650
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = +1
Query: 319 TT*TGLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 477
+T G SSGS T +TG + + S SS S+ S SP PS+S S ST
Sbjct: 1221 STVRGSTSSGS-TVTTGSTEGSSTSGSSSATSLSSS---SPVPSTSQSPNPST 1269
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 28.7 bits (61), Expect = 6.1
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Frame = -2
Query: 563 VAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIV------DLP-IEAQ 405
V P V PV+K E+D E V+ P+E ++ L D P + A+
Sbjct: 877 VVPPTPVKNPVKKWKPPWEDDDE--PTEEVKKPSEPEKKTPVLAKKEPEKPKDAPKVAAK 934
Query: 404 PEDL--EKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPGK-RYPDATWR 252
P D +KA P + A+P DLSP + + PI N+Q P + P W+
Sbjct: 935 PRDPSPKKAVPEKEPAKVAAKPRDLSPKKAI-PIPANTQEAPPTPVKNPVKKWK 987
>AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.9 protein.
Length = 250
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 340 SSGSATFSTGRSTSWAFSKSSGCASIGRS 426
+SGS T ++G TS+ SS CAS R+
Sbjct: 198 ASGSVTVTSGTCTSYIADSSSNCASWSRN 226
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFP 447
+G SS S+ +S+ +ST +SS +GR T + P P
Sbjct: 37 SGQNSSRSSVYSSSKSTVIEVEQSSRQQQVGRPTESPPLP 76
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 328 TGLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFP 447
+G SS S+ +S+ +ST +SS +GR T + P P
Sbjct: 259 SGQNSSRSSVYSSSKSTVIEVEQSSRQQQVGRPTESPPLP 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,880,186
Number of Sequences: 27780
Number of extensions: 367242
Number of successful extensions: 1350
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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