Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b24f
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   2.6  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   6.0  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   6.0  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   7.9  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 155  LQEADVAISLEGFQTEITGIFNDPVLSEFVSRFLGNLV 268
            +QEADV + ++G + +   +  D  + +F   FLG L+
Sbjct: 1043 IQEADVGVGIKGVEGQAASMSADYAIGQF--SFLGRLL 1078


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 177 IATSASWRFRAIPSRIFKWINRVALIRGRITRIFASPLPYI 55
           I   A W F+ + S I  W++ V + + + TR +     YI
Sbjct: 273 IVHKAPWLFQGVWSIIKSWLDPVVVSKVKFTRNYRDLQQYI 313


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 263 LVPELLEVFETEINEIVTDIFFEI 334
           L+P+LLE ++ +  E ++D+F  I
Sbjct: 33  LIPQLLENYKNQSGESISDLFLII 56


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +2

Query: 128 NIREGMALNLQEADVAISLEGFQTEITGIFNDPVLSEFVSRFLGNLVPELLEVFETEINE 307
           N +    LN+       SL  F TE   I + P L   ++   GN +  ++ V   +  E
Sbjct: 81  NAKSVFILNMLAIIPLASLLSFATEQLSIISGPTLGALLNASFGNAIELIVGVLALKRGE 140

Query: 308 I 310
           +
Sbjct: 141 L 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,606
Number of Sequences: 5004
Number of extensions: 30583
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)