Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b24f
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0583 + 24078766-24079800,24080585-24081643                       31   0.37 
02_01_0777 - 5785295-5787370,5787723-5788769                           31   0.48 
12_02_1034 - 25562214-25562280,25562661-25562794,25562990-255631...    30   1.1  
02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080...    27   7.9  
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803...    27   7.9  

>02_04_0583 + 24078766-24079800,24080585-24081643
          Length = 697

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 221 DPVLSEFVSRFLGNLVPELLEVFETEINEIVTDIFFEIAQ 340
           DP+L EF++RF+  L P L   F T    ++ ++   +A+
Sbjct: 75  DPLLDEFLARFVAALRPTLAAAFPTHARHVLDEMLRLVAE 114


>02_01_0777 - 5785295-5787370,5787723-5788769
          Length = 1040

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 113  LLIHLNIREGMALNLQEADVAISLEGFQTEITGIFNDPVLSE-FVSRFL-GNLVPELLEV 286
            LL+  N+  G+AL LQ  D+  +     T    +       E +V RFL  N+V EL+++
Sbjct: 822  LLLGSNMSNGLALLLQRRDIESNQVRSHTAFLVMKLACTGGEPYVHRFLEANIVHELIDM 881

Query: 287  FETEINEIVTDIFFEIAQ 340
             +  IN++    ++ + Q
Sbjct: 882  MQCNINDLQDSAYYALHQ 899


>12_02_1034 -
           25562214-25562280,25562661-25562794,25562990-25563109,
           25563331-25563510,25563847-25564020,25564466-25564639,
           25564734-25564827,25566088-25566242
          Length = 365

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 167 DVAISLEGFQTEITGIFNDPVLSEFVSRFLGNLVPELLEVF 289
           DVA +L+  +TE+ G + D  L + +  F+ N++   ++V+
Sbjct: 187 DVAKNLDSLKTELAGKYGDAELGQSIFTFVVNVIESAIKVW 227


>02_02_0492 - 10907529-10907629,10907714-10907953,10908035-10908098,
            10908416-10908721,10909347-10909561,10909656-10909950,
            10910493-10910597,10911112-10911180,10911433-10911519,
            10911953-10913704,10914964-10915054,10915217-10915488
          Length = 1198

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +1

Query: 46   GLHNIRQW*SENPRDPSSYQG---DSVDPLE 129
            GLH++R   S  P+DP  ++G   +++DPLE
Sbjct: 1025 GLHDLRTRLSIIPQDPVMFEGTLRNNIDPLE 1055


>02_02_0490 - 10879761-10879861,10879946-10880185,10880274-10880337,
            10880426-10880731,10881098-10881312,10881417-10881711,
            10882193-10882357,10882477-10882527,10882657-10883109,
            10883195-10883281,10883736-10884800,10884858-10885376
          Length = 1186

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +1

Query: 46   GLHNIRQW*SENPRDPSSYQG---DSVDPLE 129
            GLH++R   S  P+DP  ++G   +++DPLE
Sbjct: 1013 GLHDLRTRLSIIPQDPVMFEGTLRNNIDPLE 1043


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,040,820
Number of Sequences: 37544
Number of extensions: 178699
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)