Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b24f
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U64852-5|AAB04968.1|  746|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z81454-7|CAB76407.1|  378|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z46996-1|CAA87099.1|  472|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  SENPRDPSSYQGDSVDPLEYP*RNGPESP 159
           S  P DPS     SV+P E P  +GP SP
Sbjct: 150 SPGPVDPSEDPQPSVEPSEDPQPSGPPSP 178


>U64852-5|AAB04968.1|  746|Caenorhabditis elegans Hypothetical
           protein W01A11.5 protein.
          Length = 746

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = +2

Query: 8   HMIGKYDLSVTALGFTIYGNGEAKIRVIRPRIKATLLIHL-NIR-EGMALNLQEADVAIS 181
           H I K DL + AL F  +G G  K   + P     + I L N R +G  +   E   A  
Sbjct: 518 HQIAKNDLDLYALAFRDFGKGRIKKCGVSPDAFIQMAIQLANYRDQGKFVLTYEPASARF 577

Query: 182 LEGFQTEITGIFNDPVLSEFVSRFL 256
               +TE     ND    EFV   L
Sbjct: 578 FANSRTETLRTVNDH-SCEFVEAML 601


>Z81454-7|CAB76407.1|  378|Caenorhabditis elegans Hypothetical
           protein B0391.11 protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 106 LDTRTDHADFRFTIAVYCEAQSSHAEIV 23
           LD   D +DF     VY  AQ  HA+I+
Sbjct: 240 LDVSRDSSDFELNADVYESAQWKHAKII 267


>Z46996-1|CAA87099.1|  472|Caenorhabditis elegans Hypothetical
           protein C34C12.1 protein.
          Length = 472

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 209 GIFNDPVLSEFVSRFLGNLVPELLEVFETEINEIVTDIFFEIAQ 340
           GIFND   SE + ++LG +V +L  +   +I     DI   + Q
Sbjct: 327 GIFNDDESSENIRKYLGPIVEQLNRLLFLKIKVGDKDIDVPVEQ 370


>U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical
           protein T19B4.1 protein.
          Length = 663

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = -1

Query: 229 YGIIEDTGYFSLKTFKANSNVRFLEIQGHSFTDIQVDQQSRLDTRTDHADFRFTI 65
           + I+ D+    L T + N  V+ +  QGH   + +    + + +   H D+ F +
Sbjct: 528 HDIVSDSAGRLLVTDRENGRVQHMTTQGHVIEEFKSTMFTNIYSAASHEDYVFMV 582


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 209 GIFNDPVLSEFVSRFLGNLVPELLEVFETEINEIVTDIFFEIAQ 340
           GIFND   SE + ++LG +V +L  +   +I     DI   + Q
Sbjct: 322 GIFNDDESSENIRKYLGPIVEQLNRLLFLKIKVGDKDIDVPVEQ 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,055,726
Number of Sequences: 27780
Number of extensions: 160604
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)