Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b24f
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.18 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.32 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   5.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 159 WRFRA-IPSRIFKWINRVALIRGRITRIFASPLPY 58
           W++ A +  RIF WI  VA + G +  I  +P  Y
Sbjct: 539 WKYVAMVLDRIFLWIFTVACVLGTVLIILQAPSLY 573


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 159 WRFRA-IPSRIFKWINRVALIRGRITRIFASPLPY 58
           W+F A +  R+F W+  +A   G +  IF +P  Y
Sbjct: 474 WKFVAMVLDRLFLWVFTLACTAGTLGIIFQAPSLY 508


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 159 WRFRA-IPSRIFKWINRVALIRGRITRIFASPLPY 58
           W++ A +  R+F WI  +A++ G    I  +P  Y
Sbjct: 506 WKYVAMVLDRLFLWIFTLAVVVGTAGIILQAPTLY 540


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 299 SPSQTPPIAPAPSS 258
           SPS  P IA APSS
Sbjct: 510 SPSPNPRIASAPSS 523


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 335 RFQKRYQSLFR*SPSQ 288
           R ++RYQ  FR  PSQ
Sbjct: 412 RVRRRYQPAFRCKPSQ 427


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 100 TRTDHADFRFTIAV 59
           T  +HADF +TI +
Sbjct: 476 THLNHADFSYTIVI 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,377
Number of Sequences: 438
Number of extensions: 1990
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)