Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18b18r
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0630 - 8354628-8355803,8355837-8355926 113 2e-25
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 113 2e-25
04_03_0631 - 18190195-18190686,18190866-18191066 110 2e-24
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 83 4e-16
09_02_0336 - 7397745-7398308,7398813-7400723 69 6e-12
03_02_0868 + 11937652-11937757,11938097-11938671 69 6e-12
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 63 2e-10
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 62 4e-10
07_03_0346 - 17010472-17010843 57 2e-08
12_01_0723 - 6360652-6360753,6360898-6361239 42 6e-04
02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314 28 8.4
>04_01_0630 - 8354628-8355803,8355837-8355926
Length = 421
Score = 113 bits (271), Expect = 2e-25
Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 8/211 (3%)
Frame = -1
Query: 827 FPYHQLIGNLMYLSVLTRPDISYSVSYLSQFNNCFTSVHWHHAKRILKYLQKTKSYGLKF 648
FPY IG LMYL+ TRPDI++SV+ L++++ T HW K + +YL T+ GL F
Sbjct: 180 FPYLSAIGALMYLANSTRPDIAFSVNLLARYSAAPTKRHWTGVKNVFRYLNGTRDLGLFF 239
Query: 647 TKDT-CNLEGFVDADWASNSIDRKSYTGFCFKLSGCVVSYECRKQQTVALSSTEAEYMAI 471
K+ L G+ DA + S+ + +S TGF F G +S++ KQ VA S+ +E +A+
Sbjct: 240 KKNQGSTLIGYTDAGYLSDPHNARSQTGFVFLQGGTAISWKSSKQTLVATSTNHSEIIAL 299
Query: 470 AEACKEAIYLKSILSDIV-DCNY-----TVVIYNDNQGAQKLTENPLFHKR-TKHIDVRY 312
EA +E ++L+ +++ I+ C IY DN E TKHI +
Sbjct: 300 YEASRECVWLRRMVNHILTSCGIGSLESPTFIYEDNAACVVQMETGYIKSNITKHIAPKL 359
Query: 311 HFIREAVSNKLVKIDYLSTSEMPADILTKSL 219
+ E + + I + + +D+ TKSL
Sbjct: 360 FYPHELQQHGEINILQTKSCDNLSDLFTKSL 390
>02_05_0338 - 28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 113 bits (271), Expect = 2e-25
Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 3/165 (1%)
Frame = -1
Query: 863 LRLNKAECVDNQFPYHQLIGNLMYLSVLTRPDISYSVSYLSQFNNCFTSVHWHHAKRILK 684
LR NK NQ Y Q+IG+LMYL+ TRPDIS++VS LS+F + HW +R+++
Sbjct: 794 LRKNK-RIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMR 852
Query: 683 YLQKTKSYGLKFTKDTCNLEGFVDADWASNSIDRKSYTGFCFKLSGCVVSYECRKQQTVA 504
YL+ T GL +T LEG+ D++W S+ + K+ +G+ F L G VS+ KQ +
Sbjct: 853 YLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILT 912
Query: 503 LSSTEAEYMAIAEACKEAIYLKSILSD--IVDCNYTVVIYN-DNQ 378
S+ EAE A+ A EA +L+ +L D +V+ ++ N DNQ
Sbjct: 913 RSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQ 957
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 110 bits (264), Expect = 2e-24
Identities = 54/138 (39%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
Frame = -1
Query: 629 LEGFVDADWASNSIDRKSYTGFCFKLSGCVVSYECRKQQTVALSSTEAEYMAIAEACKEA 450
L G+ D+D+A +DRKS TG C L +VS+ +KQ ++ALS+ EAEY+A C +
Sbjct: 73 LLGYSDSDYAGCKVDRKSTTGTCQFLGRSLVSWSFKKQNSIALSTAEAEYVAAGSCCAQL 132
Query: 449 IYLKSILSDIVDCNYT-VVIYNDNQGAQKLTENPLFHKRTKHIDVRYHFIREAVSNKLVK 273
+++K L + N+T + + DN+ A K+ NP+ H RTKHID+R+HF+R+ + +
Sbjct: 133 LWMKQTLK-VFGYNFTKIPLLCDNESAIKIANNPVQHSRTKHIDIRHHFLRDHETKGDIC 191
Query: 272 IDYLSTSEMPADILTKSL 219
+ ++ T ADI TK L
Sbjct: 192 LTHVRTESQLADIFTKPL 209
>01_05_0320 - 20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 82.6 bits (195), Expect = 4e-16
Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Frame = -1
Query: 698 KRILKYLQKTKSYGLKFTKDTCNLEGFVDADWASNSIDRKSYTGFCFKLSGCVVSYECRK 519
+R+++YL+ T SYG+ +T LEG+ D++W S++ + K+ +G+ F L G VS++ K
Sbjct: 804 ERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGGGAVSWKSCK 863
Query: 518 QQTVALSSTEAEYMAIAEACKEAIYLKSILSD--IVDCNYTVVIYN-DNQGA-QKLTENP 351
Q + S+ EAE A+ A EA +L+ +L D +V+ ++ N DNQ K+ +
Sbjct: 864 QTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSK 923
Query: 350 LFHKRTKHIDVRYHFIREAVSNKLVKIDYLSTSEMPADILTKSL 219
K ++HI R ++V + ++ +DY+ T+ AD TK L
Sbjct: 924 DNMKSSRHIKRRL----KSVHSGVIALDYVQTARNLADQFTKGL 963
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 68.5 bits (160), Expect = 6e-12
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Frame = -1
Query: 824 PYHQLIGNLMYLSVLTRPDISYSVSYLSQFNNCFTSVHWHHAKRILKYLQKTKSYGLKFT 645
PY +G+L Y V TRPD+++ L +F + HW K++L YLQ TK L +
Sbjct: 724 PYASAVGSLQYAQVCTRPDLAFVTGLLGRFQSNPGLEHWKLIKKVLHYLQGTKGLMLSYR 783
Query: 644 K-DTCNLEGFVDADWASNSIDRKSYTGFCFKLSGCVVSYECRK 519
+ ++ + G+ D+D+A + + KS +G+ F L+G +S++ K
Sbjct: 784 RSESLQIVGYSDSDFAKD--NTKSTSGYVFTLAGGAISWKSSK 824
>03_02_0868 + 11937652-11937757,11938097-11938671
Length = 226
Score = 68.5 bits (160), Expect = 6e-12
Identities = 36/86 (41%), Positives = 53/86 (61%)
Frame = -1
Query: 863 LRLNKAECVDNQFPYHQLIGNLMYLSVLTRPDISYSVSYLSQFNNCFTSVHWHHAKRILK 684
LR NK NQ Y Q+IG+LMYL+ TRPDIS++VS LS+F + HW +R+++
Sbjct: 142 LRKNK-RIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMR 200
Query: 683 YLQKTKSYGLKFTKDTCNLEGFVDAD 606
YL+ T L ++ LEG+ D++
Sbjct: 201 YLKGTIELRLHYSGYPTVLEGYSDSN 226
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/88 (32%), Positives = 52/88 (59%)
Frame = -1
Query: 833 NQFPYHQLIGNLMYLSVLTRPDISYSVSYLSQFNNCFTSVHWHHAKRILKYLQKTKSYGL 654
++ PY +G+LMY + +RPD+S+++S +S++ HW + +YL+ T
Sbjct: 314 SRVPYSSAVGSLMYAMICSRPDLSHAMSLVSRYMANPGKEHWKAVQWFFRYLRGTTDACS 373
Query: 653 KFTKDTCNLEGFVDADWASNSIDRKSYT 570
KF + L G+VD+D+A+N R+S+T
Sbjct: 374 KFGRTDKGLVGYVDSDFAANLDKRRSFT 401
Score = 30.3 bits (65), Expect = 2.1
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = -1
Query: 338 RTKHIDVRYHFIREAVS 288
RTK+ID++YH++R+ V+
Sbjct: 416 RTKYIDIKYHYVRDVVA 432
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 62.5 bits (145), Expect = 4e-10
Identities = 32/72 (44%), Positives = 45/72 (62%)
Frame = -1
Query: 863 LRLNKAECVDNQFPYHQLIGNLMYLSVLTRPDISYSVSYLSQFNNCFTSVHWHHAKRILK 684
LR NK NQ Y Q+IG+LMYL+ TR DIS++VS LS+F + HW +R+++
Sbjct: 553 LRKNK-RIARNQLEYSQIIGSLMYLASATRLDISFAVSKLSRFTSNPGDDHWRALERVMR 611
Query: 683 YLQKTKSYGLKF 648
YL+ T GL +
Sbjct: 612 YLKGTMELGLHY 623
>07_03_0346 - 17010472-17010843
Length = 123
Score = 57.2 bits (132), Expect = 2e-08
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = -1
Query: 821 YHQLIGNLMYLSVLTRPDISYSVSYLSQFNNCFTSVHWHHAKRILKYLQKTKSYGLKF-T 645
Y L G L YL+ LTRP+++Y+V + F + H KRIL+Y++ + S GL T
Sbjct: 31 YRSLAGALQYLT-LTRPELAYAVQQVCLFMHDPREPHLALVKRILRYVKGSLSAGLHIGT 89
Query: 644 KDTCNLEGFVDADWASNSIDRKSYTGFC 561
+L + DADWA R+S +G+C
Sbjct: 90 GPVKSLTAYSDADWAGCPDSRRSTSGYC 117
>12_01_0723 - 6360652-6360753,6360898-6361239
Length = 147
Score = 41.9 bits (94), Expect = 6e-04
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = -1
Query: 491 EAEYMAIAEACKEAIYLKSILSD--IVDCNYTVVIYN-DNQGAQ-KLTENPLFHKRTKHI 324
EAE A+ A EA +L+ +L D +V+ ++ N DNQ K+ + K ++H+
Sbjct: 2 EAELTALDTATVEAKWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHV 61
Query: 323 DVRYHFIREAVSNKLVKIDYLSTSEMPADILTKSL 219
R ++R+ ++ ++ +DY+ T+ AD TK L
Sbjct: 62 KRRLKYVRKQKNSGVIALDYVQTARNLADQFTKGL 96
>02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314
Length = 261
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1
Query: 746 LSQFNNCFTSVHWHHAKRILKYLQKTKSYGLKFTKD 639
+S F+ V++H+A+RIL++ +K +Y K K+
Sbjct: 94 ISPFSQTHPFVNYHNARRILRHEKKWSTYLKKIKKE 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,749,339
Number of Sequences: 37544
Number of extensions: 273833
Number of successful extensions: 509
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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