Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b18r
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    32   0.46 
Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U37429-4|AAA79348.1|  244|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    28   7.5  

>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
            protein F14D2.6 protein.
          Length = 998

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
 Frame = -1

Query: 680  LQKTKS-YGLKFTKDTCNLEGFVDADWASNSIDRKSYTGFCFKLSG--CVVSYECRKQQT 510
            L+ TK  YGL   K T  LE     +     +  ++ T    +LS    + +    K +T
Sbjct: 834  LKNTKVIYGLLVVKSTAKLENLDFLENLEQIVSLENSTSPIIQLSSNKLLQNVNFPKIKT 893

Query: 509  VALSSTEAEYMAIAEACKEAIYLKSILSDIVDCNYTVVIYNDNQGAQKLTENP 351
               S     Y+ I +  +E IY +     + +  Y+VVIYN  Q  + L + P
Sbjct: 894  PLFSPKNNHYIEIVDNKQEIIYSQMSCFKLQNLTYSVVIYN-KQPCKSLPDVP 945


>Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical
           protein T23G7.4 protein.
          Length = 884

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -1

Query: 458 KEAIYLKSILSDIVDCNYTVVIYNDNQGAQKL---TENPLFHKRTKHIDVRYHFIREAVS 288
           K   +L S + D +     + I ND   A+ L   T+ PLF +    ID +    +E + 
Sbjct: 282 KFIFFLSSKIEDSMKKGEYITILNDYTRAKSLYADTDVPLFRELMTEIDEKMQVFKEEMK 341

Query: 287 NKLV 276
            KL+
Sbjct: 342 RKLI 345


>U37429-4|AAA79348.1|  244|Caenorhabditis elegans Hypothetical
           protein F09E5.8 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 335 TKHIDVRYHFIREAVSNKLVKI 270
           +K +D+R+HFI +  SNK+ KI
Sbjct: 72  SKCLDIRWHFIGQVQSNKIGKI 93


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
            protein 2, isoformc protein.
          Length = 936

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = -1

Query: 767  ISYSVSYLSQFNNCFTSVHWHHAKRILKYLQKTKSYGLKFTKDTCNLEGFVDADWASNSI 588
            +S SV +   F N F+   ++  K +LK    T ++  +FT +   L   +D  +  N +
Sbjct: 860  LSASVFFKFLFKNNFSQSPYNKIKVLLKSADDTSNFDSEFTHEVPKLTP-IDRLFLMN-L 917

Query: 587  DRKSYTGFCF 558
            D+  + GF F
Sbjct: 918  DQTEFEGFSF 927


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,220
Number of Sequences: 27780
Number of extensions: 285970
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)