Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18b18f
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 35 0.014
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 30 0.40
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 2.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 2.2
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 27 2.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.8
SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha... 26 5.0
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 26 5.0
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 6.6
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 25 8.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 8.7
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 25 8.7
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 34.7 bits (76), Expect = 0.014
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 652 FDHNAISES--WSPTSELISSNLVFMTSEFMAIPECSIAIIIGANFSGSPANSNDPIHSS 479
F H+ +SE W P + ++SN+ F + ++P + +G NF P + NDP S
Sbjct: 177 FLHSPVSEKAEWQPPTGSVNSNMPFQFHQSSSVPSTPSEVAMGHNF--CPMSRNDPSLQS 234
Query: 478 L 476
+
Sbjct: 235 I 235
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 29.9 bits (64), Expect = 0.40
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Frame = +3
Query: 75 IIMSSGSYLLNVPKLK---GRENYDDWAFAARNFLILEGIDIDAIPVDLSHAEDRKAKAK 245
+I+ S YLL+ PK+ RE D ++ + I+++ +DL+ + RKA +K
Sbjct: 203 VIIYSYHYLLD-PKIAERVSRELSKDCIVVFDEAHNIDNVCIESLSIDLTESSLRKA-SK 260
Query: 246 LVMTIDPKLY-VHIKNETKVKDLWQKLQKLFDDS 344
+++++ K+ V + K++D +QKL + D+
Sbjct: 261 SILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDA 294
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 550 SIAIIIGANFSGSPANSNDPIHSSLISNPV 461
S + ++ AN GSPAN N P + + I P+
Sbjct: 190 SSSYMVPANSRGSPANYNTPYYPTAIPPPI 219
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 414 TSYVSQIVETAQRLKGTGFEINEEWIGSLLLAGLPEKFAPMIMAIEHSGIAINSDVI 584
T + + + ++L G +N +WI LL + FAP I IE I+S ++
Sbjct: 390 TPHPANVRRRIRQLNGY-LTVNADWIAYALLDDTTDAFAPFIEQIEDEVDTIDSMIL 445
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -3
Query: 631 ESWSPTSELISSNLVFMTSEFMAIPECSIAIIIGANFSGSPANSNDPIHSSLISNP 464
ESW + L L + + +P I+ ++ ++ + SP+NS + SL S+P
Sbjct: 113 ESWFQSLSL-QDRLTTLRTLLHHLPSQEISTLLSSSLTSSPSNSGLSLDKSLPSSP 167
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 540 MAIEHSGIAINSDVIKTKLLDMSSEVGDHDSE 635
+ I HS AIN D+ +T D S++ D D+E
Sbjct: 195 ITISHSQFAINEDINETD--DTISDINDEDAE 224
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.8
Identities = 29/115 (25%), Positives = 51/115 (44%)
Frame = -3
Query: 634 SESWSPTSELISSNLVFMTSEFMAIPECSIAIIIGANFSGSPANSNDPIHSSLISNPVPF 455
+ S +P+S +ISS + + S +IP S ++FS S I S + S+ +P
Sbjct: 521 TSSSTPSSSIISSPMTSVLSSSSSIPTSS-----SSDFSSSITT----ISSGISSSSIPS 571
Query: 454 SLCAVSTI*LT*LVMDSQLSSRMDISVRSRLIFLVNPLSSNNFCSFCHKSLTLVS 290
+ +VS+I + S S + S S + S ++ S S T++S
Sbjct: 572 TFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILS 626
>SPBC1685.03 |sec11||signal peptidase subunit Sec11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -3
Query: 637 ISESWSPTSELISSNLVFMTSEFMAIPECSIAIIIGANFSGSPANSNDPIHSSLISNPVP 458
+SES P+ + +L+F+ + + E + + GSP D + SL P+P
Sbjct: 44 LSESMEPSFQ--RGDLLFLDNRNPSFDEAKVPSVFEKIIYGSPVGIGDIVVYSLPDRPIP 101
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +3
Query: 408 SMTSYVSQIVETAQRLKGTGFEINEEWIGSLLLAGLPEKFAPMIMAIEHSGIAINSDVIK 587
S ++ + + A++L+ ++ +W+ L+ + + F P+I IE AI V+
Sbjct: 580 SSATHPASVRRRARQLRDY-VHVSSDWLCYALIDDITDAFVPLIRGIETETEAIEDSVLV 638
Query: 588 TKLLDMS 608
+ D S
Sbjct: 639 GRSEDSS 645
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 385 DISVRSRLIFLVNPLSSNNFCSFCHKSLTLVSFL 284
D + R L+FLV+ L FC ++TL++ L
Sbjct: 264 DDTERQVLLFLVSRLGQRAFCDLRDHNVTLITLL 297
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 8.7
Identities = 24/89 (26%), Positives = 38/89 (42%)
Frame = -3
Query: 562 IPECSIAIIIGANFSGSPANSNDPIHSSLISNPVPFSLCAVSTI*LT*LVMDSQLSSRMD 383
IP SIA ++ A + S + S + L + LC + T L +
Sbjct: 450 IPRASIAHVVRATSAMSQSASARLKNLGLQQKAI---LCTLVVCEKTSLSVADVFEKYSS 506
Query: 382 ISVRSRLIFLVNPLSSNNFCSFCHKSLTL 296
+ +R RLI+ PL+S+ FC + TL
Sbjct: 507 LCLRDRLIY---PLTSSEFCDVANSLETL 532
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 87 SGSYLLNVPKLKGRENYDDWAFAAR 161
S Y NV ++KG ++YD + AR
Sbjct: 1755 SEDYKSNVKEIKGNKSYDSYEIVAR 1779
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 229 EKRKQNSS*PLIPSYMCTSKMKPKSRICGRNYKSYSMTAGSQE 357
E S PL P Y T +P + +C ++ +GSQ+
Sbjct: 164 ESYSSASESPLKPKYRLTKHTQPCTSVCWNFLSKGTLVSGSQD 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,267
Number of Sequences: 5004
Number of extensions: 66700
Number of successful extensions: 184
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -