Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18b18f
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 34 0.14
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319... 32 0.56
07_03_1049 + 23566140-23566403,23567453-23567525,23567591-235677... 31 0.74
03_02_0407 - 8187956-8188099,8188203-8188371,8188456-8188625,818... 31 0.74
01_06_0505 - 29871692-29872198,29878940-29879359 31 0.74
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 31 0.74
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406... 31 0.98
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385... 30 1.7
10_01_0099 - 1202668-1203023,1203097-1206037 29 5.2
01_03_0043 - 11919597-11920364 29 5.2
09_02_0018 + 3016137-3016186,3016529-3016776,3018717-3018811,302... 28 9.1
>02_05_0497 -
29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +3
Query: 504 LAGLPEKFAPMIMAIEHSGIAINSDVIKTKLLDMSSEVGDHDSEIALWSKQKQRVEQ 674
++ LPE +PM + +H + IKT+ D + G H SE +L K+++RV++
Sbjct: 524 VSSLPES-SPMDLKCQHESENLTDGCIKTQTDDEINVDGSHSSEDSLVEKKRRRVDE 579
>02_04_0195 +
20830849-20830950,20831498-20831690,20831800-20831904,
20832147-20832235,20832316-20832468,20832628-20832762,
20832849-20833015,20833519-20833613,20833707-20834080,
20834177-20834599
Length = 611
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 592 LVFMTSEFMAIPECSIAIIIGANFSGSPANSNDPIHSSLISNPVP 458
+VF+ F++ P + ++G N+SG+P N+P I P+P
Sbjct: 392 VVFILWAFISFPLALLGTVVGRNWSGAP---NNPCRVKTIPRPIP 433
>07_03_1049 +
23566140-23566403,23567453-23567525,23567591-23567742,
23567835-23568524,23568643-23568869,23569118-23569208
Length = 498
Score = 31.5 bits (68), Expect = 0.74
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +3
Query: 204 VDLSHAEDRKAKAKLVMTIDPKLYVHIKNETKVKDLWQKLQKLFD 338
VD HA+ + +++ ++ ID + V +KNE+ + L+QKLQ+ +D
Sbjct: 140 VDALHAKSKASRSTGLVDIDNE--VELKNESISRSLFQKLQEEYD 182
>03_02_0407 -
8187956-8188099,8188203-8188371,8188456-8188625,
8188737-8188915,8189014-8189079,8189171-8189344,
8189593-8189891,8190136-8190236,8190328-8190412,
8190527-8190680,8190781-8190986,8192403-8192647
Length = 663
Score = 31.5 bits (68), Expect = 0.74
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +3
Query: 414 TSYVSQIVETAQRLKGTGFEINEEWIGSLLLAG--LPEKFAPMIMAIEHSGIAINSDVIK 587
T Y + + E Q+ TG+ +N W G G + + I+ HSG + ++ K
Sbjct: 532 TKYAAMLAEKMQKYGATGWLVNTGWSGGRYGVGKRIRLPYTRKIIDAIHSGELLTANYKK 591
Query: 588 TKL--LDMSSEVGDHDSEI 638
T++ L++ +E+ SEI
Sbjct: 592 TEVFGLEIPTEIDGIPSEI 610
>01_06_0505 - 29871692-29872198,29878940-29879359
Length = 308
Score = 31.5 bits (68), Expect = 0.74
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +3
Query: 84 SSGSYLLNVPKLKGRENYDDWAFAARNFLILEGIDIDAIP----VDLSHAEDRKAKAKLV 251
SSGS + P+L NY W + + +G+ DAI V + D+KA++ L+
Sbjct: 16 SSGS-AFSYPQLTAT-NYTSWCIRVQAMMEDQGV-WDAIEPAAGVAVDPRRDKKARSHLL 72
Query: 252 MTIDPKLYVHIKNETKVKDLWQKLQKLF 335
++ L + + + K++W L+ F
Sbjct: 73 QSLPEDLLMQVAKKRSAKEVWDCLKTRF 100
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 31.5 bits (68), Expect = 0.74
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 426 SQIVETAQRLKGTGFEINEEWIGSLLLAGLPEKFAPMIMAIEHSGIAINSDVIKT 590
S + ++ G ++ E + LL +P+KF P+I IE G V +T
Sbjct: 551 SSVTTIVNEIRSLGTKVEETTVVEKLLHSVPDKFQPLISTIEQWGDVSEMTVTET 605
>11_01_0518 +
4057428-4057538,4059609-4059801,4059921-4060025,
4060259-4060347,4060424-4060576,4060754-4060888,
4061241-4061407,4062129-4062223,4062367-4062740,
4062903-4063176,4063806-4063822
Length = 570
Score = 31.1 bits (67), Expect = 0.98
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 592 LVFMTSEFMAIPECSIAIIIGANFSGSPANSNDPIHSSLISNPVP 458
++F+ F++ P + ++G N+SG+P N+P I P+P
Sbjct: 395 VIFVLWAFISFPLVLLGTVVGRNWSGAP---NNPCRVKTIPRPIP 436
>12_01_0486 +
3854889-3855014,3855897-3856089,3856206-3856310,
3856541-3856629,3856720-3856872,3857047-3857181,
3857293-3857459,3858193-3858287,3858495-3858868,
3859101-3859374,3859464-3859531
Length = 592
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 592 LVFMTSEFMAIPECSIAIIIGANFSGSPANSNDPIHSSLISNPVP 458
++F+ F++ P + ++G N+SG+P N+P I P+P
Sbjct: 400 VMFVLWAFISFPLVLLGTVVGRNWSGAP---NNPCRVKTIPRPIP 441
>10_01_0099 - 1202668-1203023,1203097-1206037
Length = 1098
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = -3
Query: 568 MAIPECSIAIIIGA-NFSGSPANSNDPIHSSLISNPVPFSLCAVSTI*LT*LVMDSQLSS 392
+++P+ I +G NFS P + + S+ + P+P S+ ++S + L + +QL+
Sbjct: 66 ISLPDAGIHGQLGELNFSSLPFLTYIDLSSNSVYGPIPSSISSLSALTYLDLQL-NQLTG 124
Query: 391 RM--DISVRSRLIFLVNPLSSNN 329
RM +IS RL L LS NN
Sbjct: 125 RMPDEISELQRLTML--DLSYNN 145
>01_03_0043 - 11919597-11920364
Length = 255
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +3
Query: 405 ESMTSYVSQIVETAQRLKGTGFEINEEWIGSLLLAGLPEKFAPMIMAIEHSGIAINSDVI 584
ES+ ++ LKG G + I +L LPEK+ ++ + INSD+
Sbjct: 126 ESVNDMYGRLNVIVNDLKGLGVNYTDLEIAQKMLRALPEKYETLVTML------INSDMS 179
Query: 585 KTKLLDMSSEVGDHD 629
+ K + ++ +D
Sbjct: 180 RMKPASLLGKINTND 194
>09_02_0018 +
3016137-3016186,3016529-3016776,3018717-3018811,
3020025-3020330,3021288-3021336,3021436-3021637,
3023364-3023532,3023605-3023634,3023742-3023807,
3025313-3025378,3029404-3029464,3029592-3029719,
3030716-3030757,3031074-3031190,3031280-3031339
Length = 562
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 607 LISSNLVFMTSEFMAIPECSIAIII 533
+I L+FMT F IP+C++A I+
Sbjct: 473 IIGGALLFMTPLFTDIPQCALAAIV 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,191,525
Number of Sequences: 37544
Number of extensions: 384411
Number of successful extensions: 991
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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