Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18b18f
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-7|AAK84463.1| 531|Caenorhabditis elegans Lipid deplete... 31 1.2
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z48006-4|CAA88048.1| 429|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical p... 29 2.7
AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic ace... 29 2.7
Z78014-1|CAB01428.1| 411|Caenorhabditis elegans Hypothetical pr... 29 3.5
U80445-1|AAB37794.1| 855|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z70753-9|CAA94765.1| 502|Caenorhabditis elegans Hypothetical pr... 28 6.2
U50066-1|AAA93437.2| 378|Caenorhabditis elegans Resistance to i... 28 8.1
>AC006679-7|AAK84463.1| 531|Caenorhabditis elegans Lipid depleted
protein 7 protein.
Length = 531
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 638 NF*VMVTYLRTHIKQFGFYDIRIYGNSGMFY 546
+F V+VT++ +I GF + ++Y + G+FY
Sbjct: 216 DFTVLVTFVEFYIAMLGFVNFKLYQDIGLFY 246
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/50 (26%), Positives = 32/50 (64%)
Frame = +3
Query: 582 IKTKLLDMSSEVGDHDSEIALWSKQKQRVEQNFNKKFEKPTSNYTQNVKK 731
++ ++ +M+ ++ D + + A +KQK+++EQ+ N+ +K S+ +KK
Sbjct: 925 LEKQMANMNDQLCDEEEKNAALTKQKKKIEQD-NEGLKKTVSDLETTIKK 973
>Z48006-4|CAA88048.1| 429|Caenorhabditis elegans Hypothetical
protein F19C6.3 protein.
Length = 429
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Frame = -1
Query: 678 NFVLPFVFVSTIMQFLSHGHLPQNSYQAIWFL*HQNL---WQFRNVLLP*SSGQTFLAAP 508
+ ++P V +S +SHGH+ ++SY ++ ++ W N L S+G FLA
Sbjct: 5 HLIIPLVLIS-----VSHGHIDRSSYILAHYMNLLSIGESWILTNFDLD-SNGTFFLAQN 58
Query: 507 PTAMIRSIPH*FQTLYLLVFVQFPLSDLRNLSWIHNYQVEWISVFEVG 364
R I F+ L + + S +++ +W Y +++ S+ ++G
Sbjct: 59 SE---RRIEFGFKNKTLYMVLPISKSRIQSNNWEKRYVIDFDSIGKIG 103
>Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical
protein T09A5.3 protein.
Length = 538
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -3
Query: 724 TFCV*FEVGFSNFLLKFCSTLCFCFDHNAISESWSPTSELISSNLVFMTSEFMAIPECSI 545
TF F V L+ F S L FC +SE + ++ S F+T P S
Sbjct: 247 TFYYVFNVVLPTLLVSFMSLLAFCLPATDLSEKIGLQTTILLSVCFFLTILSEMTPTTSE 306
Query: 544 AI-IIGANFS 518
A+ ++G FS
Sbjct: 307 AVPLLGVFFS 316
>AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-7 protein.
Length = 538
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -3
Query: 724 TFCV*FEVGFSNFLLKFCSTLCFCFDHNAISESWSPTSELISSNLVFMTSEFMAIPECSI 545
TF F V L+ F S L FC +SE + ++ S F+T P S
Sbjct: 247 TFYYVFNVVLPTLLVSFMSLLAFCLPATDLSEKIGLQTTILLSVCFFLTILSEMTPTTSE 306
Query: 544 AI-IIGANFS 518
A+ ++G FS
Sbjct: 307 AVPLLGVFFS 316
>Z78014-1|CAB01428.1| 411|Caenorhabditis elegans Hypothetical
protein F42E8.1 protein.
Length = 411
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 736 IIFFTFCV*FEVGFSNFLLKFCSTLCFCFD 647
+ FF+FC + GF N L+ FCS C+D
Sbjct: 19 VAFFSFCGSAK-GFENRLINFCSGSDICYD 47
>U80445-1|AAB37794.1| 855|Caenorhabditis elegans Hypothetical
protein C50F2.3 protein.
Length = 855
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 249 VMTIDPKLYVHIKNETKVKDLWQKLQKLFDDSG 347
V +++PK+ V KV+DLW L KL++D+G
Sbjct: 388 VKSVNPKIQVG-----KVRDLWIGLAKLYEDNG 415
>Z70753-9|CAA94765.1| 502|Caenorhabditis elegans Hypothetical
protein F40F9.10 protein.
Length = 502
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 488 DRIIAVGGAARKVCPDDYGNRTF 556
DR++ + G R+VCPD +R +
Sbjct: 243 DRLLVIHGDCRRVCPDQTADRVY 265
>U50066-1|AAA93437.2| 378|Caenorhabditis elegans Resistance to
inhibitors of cholinesteraseprotein 3 protein.
Length = 378
Score = 27.9 bits (59), Expect = 8.1
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Frame = +3
Query: 174 LEGIDIDAIPVDLSHAEDRKAKAKLVMTIDPKLYVHIKNETKVKDL------WQKLQKLF 335
LE + A PVDL A+ R + + ++ + + NE +KDL +Q L K +
Sbjct: 207 LESVQAGANPVDLDAADKRSEQLEEDPSVKEAVGLTETNEQYIKDLEVALKEFQSLSKEY 266
Query: 336 DDSGFTRKXXXXXXXXXXXXDNCESMTSYVSQIVETAQRLK 458
D + +K ++ E +S +S+I E + +K
Sbjct: 267 DKAKM-KKLKRKDSSSDEDEEDEEENSSELSEIEEEEEEVK 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,577
Number of Sequences: 27780
Number of extensions: 374679
Number of successful extensions: 1092
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -