Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b13r
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...    65   5e-11
AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...    65   5e-11
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical pr...    29   5.5  

>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 29/44 (65%), Positives = 37/44 (84%)
 Frame = -1

Query: 760 DETGVDEKDVEIVMSQANVSRAKAVRALKNNQSDIVNAIMELTM 629
           D TG++EKD+E+V+SQAN +R KA+RALK   +DIVNAIM LTM
Sbjct: 152 DSTGIEEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLTM 195


>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 29/44 (65%), Positives = 37/44 (84%)
 Frame = -1

Query: 760 DETGVDEKDVEIVMSQANVSRAKAVRALKNNQSDIVNAIMELTM 629
           D TG++EKD+E+V+SQAN +R KA+RALK   +DIVNAIM LTM
Sbjct: 154 DSTGIEEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLTM 197


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 374 AYINENKTLAYTCIHY*KEM-WPNQITLNLQIVQTLLMI 487
           AY+NEN T    C+ +   + WP    L L IV  +L++
Sbjct: 201 AYLNENWTAGIFCVAFSTMVGWPFSAVLGLPIVADMLLL 239


>U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical
           protein C15H9.5 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -1

Query: 760 DETGVDEKDVEIVMSQANVSRAKAVRALKNNQSDIVNAIMELTM*EKPSSQYLMSLL 590
           +E  +DE+ +    S ANVSR        NNQ+D  +      + +KPS  Y  SLL
Sbjct: 528 NEQEIDEQFLTKAYSDANVSRRLVSDESSNNQTDYPHQ----KLLKKPSQTYEQSLL 580


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,587,221
Number of Sequences: 27780
Number of extensions: 316414
Number of successful extensions: 823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)