Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b13r
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    27   0.29 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.1  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 446 ITLNLQIVQTLLMIFFFTSSIQFNISP-IMHVFIRLFVQLLMLRAT 580
           +TL++ I   +L + F + S   N+SP +  VF+    +LLM+R T
Sbjct: 323 VTLSIWITVCVLNVHFRSPSTH-NMSPWVRQVFLNWMPRLLMMRRT 367


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 630 CRRSLRHNILCHCC*F 583
           CR       LCHCC F
Sbjct: 737 CRYEAHCFALCHCCDF 752


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 17/79 (21%), Positives = 33/79 (41%)
 Frame = -1

Query: 730  EIVMSQANVSRAKAVRALKNNQSDIVNAIMELTM*EKPSSQYLMSLLLVLSRSQH*QLDE 551
            ++ +S A  S + A     +N       +++L + E P     +   +V SRS + +   
Sbjct: 871  QLQISSAEASDSGAYFCQASNLYGRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKWQH 930

Query: 550  KSNEHMHNRRYIELYTRSE 494
            KS +     +YI  Y   +
Sbjct: 931  KSQDTTEVTKYILQYKEGD 949


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 17/79 (21%), Positives = 33/79 (41%)
 Frame = -1

Query: 730  EIVMSQANVSRAKAVRALKNNQSDIVNAIMELTM*EKPSSQYLMSLLLVLSRSQH*QLDE 551
            ++ +S A  S + A     +N       +++L + E P     +   +V SRS + +   
Sbjct: 867  QLQISSAEASDSGAYFCQASNLYGRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKWQH 926

Query: 550  KSNEHMHNRRYIELYTRSE 494
            KS +     +YI  Y   +
Sbjct: 927  KSQDTTEVTKYILQYKEGD 945


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 124 YYFYKLYISIVSFLYMILSFQL 189
           YY + L +S + FL + L F+L
Sbjct: 70  YYLFNLAVSDLLFLILGLPFEL 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,440
Number of Sequences: 438
Number of extensions: 4145
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)