Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b13f
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...   105   9e-24
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   2.8  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.8  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.8  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   6.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.7  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score =  105 bits (251), Expect = 9e-24
 Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
 Frame = +1

Query: 277 KKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 456
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P VYK+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 457 QATMAAAERFKAPET------TATGNDASTTGTTVAPIAXXXXXXXXXXXXXXXXXXXIV 618
           QA      + +A ET      T    DA    T                         +V
Sbjct: 84  QARAFNESQKQATETKEEAAITEESGDAQPADTAKIE-ESFEQEKAVDETGVDAKDIELV 142

Query: 619 MSQANVSRAKAVRALKNNQSDIVNAIMELTM 711
           M+QANVSRAKAV ALK N SD+VNAIM LTM
Sbjct: 143 MAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 64  QQYIKMPELTELDKATASMTEKRKEE 141
           ++YIK  +LTELD     +T+ RK +
Sbjct: 205 KEYIKKCQLTELDPTQQLLTQSRKNQ 230


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 466 MAAAERFKAPETTATGNDASTTGTTVA 546
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 466 MAAAERFKAPETTATGNDASTTGTTVA 546
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 348 SDCHSLYSLYWFETEFTHYLSGLLLTTRLFRF 253
           +D    ++L W  T F H +S + +  RLF F
Sbjct: 184 ADIQCYFALSWLITWFAHDVSDISVVCRLFDF 215


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 489 LESLCCSHGGL 457
           LE  CCSHGGL
Sbjct: 656 LELFCCSHGGL 666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.128    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,831
Number of Sequences: 5004
Number of extensions: 47341
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)