Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18b13f
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 142 2e-34
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087... 136 1e-32
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 31 1.3
04_04_0360 - 24684159-24684565,24684654-24685089 29 3.0
03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184 29 5.2
01_01_0456 - 3385907-3386174,3386283-3386470,3386542-3387027,338... 28 6.9
04_01_0377 - 4970034-4970687 28 9.1
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 9.1
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 142 bits (345), Expect = 2e-34
Identities = 75/151 (49%), Positives = 101/151 (66%)
Frame = +1
Query: 256 SKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEA 435
SKQSR EKK+RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEA
Sbjct: 75 SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134
Query: 436 KIEDLSTQATMAAAERFKAPETTATGNDASTTGTTVAPIAXXXXXXXXXXXXXXXXXXXI 615
KIEDLS+Q AA++F+ + + + A A +
Sbjct: 135 KIEDLSSQLQAQAAQQFRMQDLSKV-----MSKPDAAAAAPADEEEEVDETGIEPRDIDL 189
Query: 616 VMSQANVSRAKAVRALKNNQSDIVNAIMELT 708
VM+QA+VSRAKAV+ALK + DIV+AIMELT
Sbjct: 190 VMTQASVSRAKAVKALKAHDGDIVSAIMELT 220
>01_07_0123 +
41206782-41206844,41207701-41207782,41208587-41208717,
41208758-41209147
Length = 221
Score = 136 bits (330), Expect = 1e-32
Identities = 85/178 (47%), Positives = 104/178 (58%), Gaps = 19/178 (10%)
Frame = +1
Query: 232 AGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKN----------------- 360
AG D +SKQSR EKK+RK M KLG+K + GV RVTI+KSKN
Sbjct: 50 AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109
Query: 361 --ILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERFKAPETTATGNDASTTG 534
ILFVI+ PDV+K+P+SDTY++FGEAKIEDLS+Q AAE+FKAP D S
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAP-------DLSNVI 162
Query: 535 TTVAPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSRAKAVRALKNNQSDIVNAIMELT 708
+ P A +VM+QA VSR++AV+ALK DIV AIMELT
Sbjct: 163 SKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRSRAVKALKAANGDIVTAIMELT 220
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 407 QTPTLFLVKPRLKICPHRPPWLQQRDSRHQRPQPLA 514
Q P ++ +L P +PP LQ + HQ+PQP A
Sbjct: 244 QQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQA 279
>04_04_0360 - 24684159-24684565,24684654-24685089
Length = 280
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 534 SSCGSVIASGCGLWCLESLCCSHGGLCG 451
S+ G A CG C ++CCS G CG
Sbjct: 14 SATGQASAQNCG--CQSNMCCSKWGYCG 39
>03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184
Length = 259
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = +1
Query: 205 DAGGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSP 384
D G P+ D+ + Q RG+ I+ L LKP E + S + + S
Sbjct: 134 DLGEFVLPLFEEDVDIEDVQQRGQPDIPVIVQALTLKPFVQWEETSQSPSAEVNMAMTSL 193
Query: 385 DVYKN--PHSDTYIVFGEAKIEDLSTQATMAAAERFKAPE 498
D ++N D I + K+E + TM ++ +A E
Sbjct: 194 D-FENMLADRDRRIQYWRTKLEVAELKKTMVEVKKDQAVE 232
>01_01_0456 -
3385907-3386174,3386283-3386470,3386542-3387027,
3387123-3387184,3387269-3387429,3388215-3388290,
3388382-3388471,3388591-3388659,3389498-3389756
Length = 552
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -1
Query: 627 LGHYYLHVLLINSSLVYSXXXXXFCYWCYRRSSCGSVIASGCGLWCLESLCCSH 466
+G YLH N +V S RS S LW ++SLCC+H
Sbjct: 362 IGEGYLHEKR-NEYIVRSIICRKEEQQAITRSMLSSTAIDEKNLWVVDSLCCNH 414
>04_01_0377 - 4970034-4970687
Length = 217
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 546 CYRRSSCGSVIASGCGLWCLESLCCSHGGLCG 451
C CGS G G C + CCS G CG
Sbjct: 58 CCSSQRCGS---QGGGATCSNNQCCSQYGYCG 86
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 163 SHCQMMQSLLCASRS*RRWPCQVQSVLAS 77
S C +QSL+ ++ +RWP V S LAS
Sbjct: 422 SLCSSLQSLILSNNKIKRWPGTVFSSLAS 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.128 0.345
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,107,124
Number of Sequences: 37544
Number of extensions: 316929
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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