Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b11f
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0991 - 21500143-21500799,21500834-21501172                       29   5.2  
02_01_0329 - 2263602-2264879                                           28   6.8  
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783     28   9.0  

>04_03_0991 - 21500143-21500799,21500834-21501172
          Length = 331

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 199 ISPSNAHPYLAGLLITFINAVGTSACGSSLLSANRLVTAA 318
           + PS+ H +L GLL T   A  T        +A+RLV AA
Sbjct: 157 VPPSDLHRHLGGLLATGEGADVTFEVSGKTFAAHRLVLAA 196


>02_01_0329 - 2263602-2264879
          Length = 425

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 741 PTPPAPFVQMFEFPHEVATENGHALLHCDHLQVHLAHHLIYRDTSLRVT 595
           P PP P+V   ++ H V     +A +   H+ +    H  Y   + R T
Sbjct: 213 PMPPPPYVHAADYKHVVGDTCAYAAVGNSHILLSSMRHGTYSFDTARAT 261


>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
          Length = 1439

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 103 PHSRGRRSPPAHRLMCSPRRRYRRVQQFSFRQ 8
           P   G  SPP  R+M  P    R  + FSF Q
Sbjct: 489 PGEAGEESPPRSRIMAMPLMGKRMFEGFSFLQ 520


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,125,891
Number of Sequences: 37544
Number of extensions: 488635
Number of successful extensions: 1360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)