Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b11f
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    60   2e-11
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   5.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 60.5 bits (140), Expect = 2e-11
 Identities = 47/188 (25%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
 Frame = +1

Query: 172 NAARIVGGAISPSNAHPYLAGLLITFINAVGTSACGSSLLSANRLVTAAHCWFDGRFQAN 351
           N +RIVGG  +  N  P +AG+  T+   +    CG++++S   ++TAAHC  D      
Sbjct: 157 NPSRIVGGTNTGINEFPMMAGIKRTYEPGM---ICGATIISKRYVLTAAHCIIDE--NTT 211

Query: 352 QFVVVLG-----SNTLFHGGVRVTTRQVFVHPQWNPTLLN----NDVAMIYLPHRVTLNN 504
           +  +V+G     S T  +  V  +  +V +HP+++    +    ND+A++     +   +
Sbjct: 212 KLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGD 271

Query: 505 NIKPIALPNTADLNNLFVGQWAVAAGYGLTSDAQTGISVNQVMSQVNLQVITVQQCMAVF 684
            + P  LP    L++ F G      G+G TS    G+ ++ ++ +  L ++T  +C   +
Sbjct: 272 KVGPACLPFQHFLDS-FAGSDVTVLGWGHTS--FNGM-LSHILQKTTLNMLTQVECYKYY 327

Query: 685 GSNFVRKL 708
           G+  V  +
Sbjct: 328 GNIMVNAM 335


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 562 QWAVAAGYGLTSDAQTGISVNQVMSQVNL 648
           QW  +   G +S + T + VN+    VNL
Sbjct: 421 QWDDSVSAGFSSSSNTWLRVNENYKTVNL 449


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 562 QWAVAAGYGLTSDAQTGISVNQVMSQVNL 648
           QW  +   G +S + T + VN+    VNL
Sbjct: 421 QWDDSVSAGFSSSSNTWLRVNENYKTVNL 449


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 52  GYTSAYVPVETFYHENVGIPLAKS 123
           GY S   PV+  Y  NV   L K+
Sbjct: 619 GYASVVGPVKGIYQHNVASGLTKA 642


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 100 VGIPLAKSIRAAETAKLDSSVQPDNAARIV 189
           VG+   K+ +A   +  +  +QP  AA +V
Sbjct: 85  VGVHCMKTTQAVVVSLYEDPIQPQQAASVV 114


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 97  NVGIPLAKSIRAAETAKLDSSVQPD 171
           NV I  AKSIRA  T  + +SV  D
Sbjct: 245 NVLIERAKSIRARRTECVTNSVTCD 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,392
Number of Sequences: 438
Number of extensions: 4658
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)