Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b10r
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    23   1.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   1.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   3.2  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   3.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   4.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   7.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   7.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   7.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   9.8  

>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 316 ISNMPEMIKSPADLKTAPF 260
           +S MP+ +K P D   AP+
Sbjct: 9   VSTMPKSLKEPCDGCAAPY 27


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 145 RVYRSLCPNEWVDKWDNQRAEGTFAGRI 62
           R++     NE VDK  N+RA G    +I
Sbjct: 376 RIFSPHEENESVDKHPNRRARGQLRTKI 403


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 246 LTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGL 130
           L K+      K T T  +ARK   KNT     SR  + L
Sbjct: 327 LKKVNSKYILKSTLTPKLARKQFQKNTTGLERSRSWSSL 365


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 100 PTCRPTHWGRETCTLS*NSSMVRIFRRELSGNGG 201
           PT      G+E  + S NS    IF+R L G  G
Sbjct: 31  PTGHQEMQGKEKNSASLNSENFGIFKRALMGFQG 64


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -3

Query: 294 SNRPPTSKQHLSTH--GSLT 241
           +N   TS QHL TH  G+LT
Sbjct: 119 NNNHYTSHQHLRTHLRGTLT 138


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 19  TNRNKLKHWERLGSKSYRRRCLRRAGCP 102
           T+ NK     + G   Y  R   +AGCP
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLTIKAGCP 131


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 68  TGEGAFGALVVPLVDPLI 121
           TG G   A  VP+++ L+
Sbjct: 242 TGSGKTAAFAVPIINTLL 259


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 68  TGEGAFGALVVPLVDPL 118
           TG G   +LVV  +DP+
Sbjct: 184 TGNGGLVSLVVQAMDPV 200


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 177 AKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVG 64
           A  T+ AT S E +  +A ++ +         +PSP G
Sbjct: 29  ACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTG 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,973
Number of Sequences: 438
Number of extensions: 2115
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)