Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18b07r
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 28 1.4
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 28 1.9
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 2.5
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 27 2.5
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 27 3.3
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 26 7.6
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 7.6
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 7.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.6
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 549 WRFSPHCLQKHHPPSLRVQYHQE--RLGYSH 463
W + HCL K P+L V H+E +GYS+
Sbjct: 151 WDVTRHCLGKFKVPNLYVPRHEEWRMMGYSY 181
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 101 VRKGSPTTRCRLGDRCRSEPMRCHCHHCKY 190
V+ G+ TR ++GDR + M C +C+Y
Sbjct: 76 VKVGAGVTRLKIGDRVGVKWMNSSCGNCEY 105
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -2
Query: 639 HRCSLHCCCIHTW--KSLWKSSSDSRHKPMELWRFSPHCLQKHH 514
H+C HC C H + + + + HKP W+ HC HH
Sbjct: 167 HKCKEHCSCHHDKFPRPVPHNGTKPDHKP---WKHEEHC---HH 204
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 699 WYLHQELCLRRLSAHRTLGAHRCSLHCCCIHTWKS 595
W L LCLR + HR LG H + + W +
Sbjct: 36 WNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSN 70
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 515 THPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFD 405
T Y+S+ I G+L++SS I N V ++LSF+
Sbjct: 852 TFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLSFN 888
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -3
Query: 701 NGIF--IRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWN-SGGSLHT 531
NG F + F G T+ VL + A + S+S + + W+ G SLH
Sbjct: 63 NGKFSLVDRFTIDGHSPTSLCVLENGSVLTANYNSASISRSKAKDEKPHVWHHEGKSLHP 122
Query: 530 VSRNITHPHYVS 495
+ +HPH V+
Sbjct: 123 ERQTSSHPHQVT 134
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 7.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 705 HCYHMGVAALSC 740
HCYH G+ AL C
Sbjct: 165 HCYHHGITALLC 176
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 377 VAGWGRVRANGALSTNLLEINVRTIDGQT 291
++GW V A + +LL + V TI+G+T
Sbjct: 208 LSGWNPVPAEFVIQGHLLYLTVLTIEGKT 236
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 699 WYLHQELCLRRLSAHRTLGAHRCSLHCCCIHTW 601
W L +C+R HR+LG H + + +W
Sbjct: 42 WNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSW 74
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 543 TSRVPLVCADCQTKISRETSKCEYSNNAMSSGEHRACGEH 662
TS A +T +SR SK E + SS + GEH
Sbjct: 1268 TSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEH 1307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,181
Number of Sequences: 5004
Number of extensions: 72667
Number of successful extensions: 239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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