Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18b07r
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 30 2.6
06_03_1476 - 30399317-30399347,30399636-30399722,30400035-304001... 29 3.5
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311... 29 3.5
02_03_0134 - 15596379-15597689 29 4.6
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 29 4.6
12_02_1202 - 26957254-26957778 28 8.0
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985 28 8.0
02_05_0310 + 27769988-27770830 28 8.0
01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594... 28 8.0
01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912 28 8.0
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 713 PYGGGCPELPGYPPQYERSGPHARRRWTCHLQAWGG 820
P G P PPQ E G H R+ C Q GG
Sbjct: 76 PRSGRPKNQPSPPPQEEEEGNHGSARYDCTFQDEGG 111
>06_03_1476 -
30399317-30399347,30399636-30399722,30400035-30400192,
30400276-30400497,30400744-30400881,30400977-30401105,
30401346-30401369,30401569-30401614,30401692-30401773,
30401836-30401955,30402039-30402072
Length = 356
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 129 ADLETAVGPSQCAATVTIASTSSFCVECAELDMRFDRRSPHVKVNG 266
A + VG A++ + SSF +EC+++ + +++ H K+ G
Sbjct: 293 AQSDKKVGQKHTGASIFVLIYSSFAMECSKMMVELHQKAGHGKLTG 338
>03_02_0895 +
12230683-12230844,12230937-12230991,12231106-12231169,
12231292-12231334,12231509-12231607,12231710-12231778,
12231912-12232245,12232317-12232471,12232592-12233287
Length = 558
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -1
Query: 745 ARQLRAATPIW*Q*LMVSSSGALSAEAQCSPHARCSP 635
ARQ A W SSSGA +A PH RC P
Sbjct: 366 ARQAAPAPGYWPNCGFASSSGAGTASRSFLPHGRCPP 402
>02_03_0134 - 15596379-15597689
Length = 436
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 87 VRSSPCAREAPRHDADLETAVGPSQCAATVTIASTSSF 200
V SSP + +P HDA A PS +T T S S+F
Sbjct: 38 VPSSPDRKLSPSHDASSSNAYRPSSSFSTRTGTSRSTF 75
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -2
Query: 588 KSSSDSRHKPME--LWRFSPHCLQKHHP 511
+S SDS HK ++ W F P + +HHP
Sbjct: 144 QSDSDSSHKKLQGLSWSFPPSIVLEHHP 171
>12_02_1202 - 26957254-26957778
Length = 174
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 215 CTFHAEGTGTC-NGDSGSALARTDSG 141
C+F+ GTG+C GD AL+ T SG
Sbjct: 75 CSFNGAGTGSCATGDCAGALSCTLSG 100
>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
Length = 773
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 60 PEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTIAST 191
PEG + D + S C R P L+TA+G A TVT+A+T
Sbjct: 346 PEGRNGDGRKKGSGCKRHFP-----LDTALGVG-LALTVTLATT 383
>02_05_0310 + 27769988-27770830
Length = 280
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 209 FHAEGTGTCNGDSGSALARTDSGLQVGIVSWG 114
F +G G C +S S L R S L+ + SWG
Sbjct: 79 FDHDGGGGCGPESFSGLLRELSELEQSVASWG 110
>01_01_0769 -
5944910-5946613,5946768-5946887,5948243-5948300,
5948544-5948627,5949356-5949456,5949562-5949745,
5950746-5950774,5951134-5951226
Length = 790
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -2
Query: 672 RRLSAHRTLGAHRCSLHCCCIHTWKSLWKSSSDSRHKPMELWRFSPH 532
R LS H T+G +++CCC H S + HKP E W S H
Sbjct: 687 RGLSQH-TVGRIENTMNCCCSHP-----SVSGIANHKP-EYWSGSDH 726
>01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912
Length = 487
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -1
Query: 229 LISSSAHSTQKELVLAMVTVAAHWLGPTAVSKSASCRGASLAHGELLTCSSESA 68
L+ SSA S L + AA WL + S+S A+ A G L S +A
Sbjct: 67 LVGSSAASRPDMLASVLSHYAAKWLPDVVAASSSSSSPATSASGRFLPPESPTA 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,268,256
Number of Sequences: 37544
Number of extensions: 608984
Number of successful extensions: 2084
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2084
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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