Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b06f
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            26   1.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   1.1  
Y17700-1|CAA76820.1|  122|Anopheles gambiae hypothetical protein...    23   7.6  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   7.6  

>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 625 LRSRXQPCSGVRRPTRHQQITVNYSNDTCESK 720
           L +   P  G RRPT++QQI   +++D  E++
Sbjct: 16  LANEFNPNRGRRRPTKNQQIYGVWADDDSENE 47


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 427  GSERPQDAAENADFSFSGTD*C*NSGN 347
            GSE+P++A E +  + SGTD   +SG+
Sbjct: 1348 GSEKPKNAIEPSQEAVSGTDNANDSGD 1374


>Y17700-1|CAA76820.1|  122|Anopheles gambiae hypothetical protein
           protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 584 VNNFLEKIPVYLTDYAAXVS 643
           VN   EK+P YL++ +A V+
Sbjct: 88  VNAIYEKLPAYLSEVSARVN 107


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 197 DGYAGSWSPPGASDI-INFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASV 370
           DG  G    P   +  ++ +GR T     D+ S+    +      +N++LAV     SV
Sbjct: 315 DGKLGGVITPNDGECHLDHNGRYTHSTTQDYPSISQINLKVKQNAINVILAVTAEELSV 373


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,626
Number of Sequences: 2352
Number of extensions: 13929
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)